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    RGTA1 RAB geranylgeranyl transferase alpha subunit 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828551, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RGTA1
    Official Full Name
    RAB geranylgeranyl transferase alpha subunit 1
    Primary source
    TAIR:AT4G24490
    Locus tag
    AT4G24490
    See related
    Araport:AT4G24490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRGTA1; RAB geranylgeranyl transferase alpha subunit 1
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    Genomic context

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    See RGTA1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Sequence:
    Chromosome: 4; NC_003075.7 (12655059..12658348, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene CRT (chloroquine-resistance transporter)-like transporter 2 Neighboring gene GATA-type zinc finger protein with TIFY domain-containing protein Neighboring gene Protein kinase superfamily protein Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rab geranylgeranyl transferase β subunit is essential for male fertility and tip growth in Arabidopsis. Gutkowska M, et al. J Exp Bot, 2015 Jan. PMID 25316062, Free PMC Article
    2. Arabidopsis Rab Geranylgeranyltransferases Demonstrate Redundancy and Broad Substrate Specificity in Vitro. Shi W, et al. J Biol Chem, 2016 Jan 15. PMID 26589801, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084974.1
    NM_118582.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables Rab geranylgeranyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein geranylgeranylation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Rab-protein geranylgeranyltransferase complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RAB geranylgeranyl transferase alpha subunit 1
    NP_001078443.1
    • RAB geranylgeranyl transferase alpha subunit 1; FUNCTIONS IN: protein prenyltransferase activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase alpha subunit 2 (TAIR:AT5G41820.1); Has 3834 Blast hits to 3112 proteins in 396 species: Archae - 22; Bacteria - 493; Metazoa - 1923; Fungi - 431; Plants - 375; Viruses - 2; Other Eukaryotes - 588 (source: NCBI BLink).
    NP_194180.2
    • RAB geranylgeranyl transferase alpha subunit 1 (RGTA1); FUNCTIONS IN: protein prenyltransferase activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase alpha subunit 2 (TAIR:AT5G41820.1); Has 3834 Blast hits to 3112 proteins in 396 species: Archae - 22; Bacteria - 493; Metazoa - 1923; Fungi - 431; Plants - 375; Viruses - 2; Other Eukaryotes - 588 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12655059..12658348 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118582.4 → NP_194180.2  RAB geranylgeranyl transferase alpha subunit 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194180.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DHR9, Q8VYB7, Q9M0L4, Q9SB46, Q9STU6
      UniProtKB/TrEMBL
      A0A178UYH8
      Conserved Domains (4) summary
      cd00116
      Location:507 → 644
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:513 → 534
      LRR_RI; leucine-rich repeat [structural motif]
      pfam01239
      Location:160 → 186
      PPTA; Protein prenyltransferase alpha subunit repeat
      pfam13855
      Location:535 → 592
      LRR_8; Leucine rich repeat

    2. NM_001084974.1 → NP_001078443.1  RAB geranylgeranyl transferase alpha subunit 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078443.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DHR9, Q8VYB7, Q9M0L4, Q9SB46, Q9STU6
      UniProtKB/TrEMBL
      A0A178UYH8
      Conserved Domains (4) summary
      cd00116
      Location:507 → 644
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:513 → 534
      LRR_RI; leucine-rich repeat [structural motif]
      pfam01239
      Location:160 → 186
      PPTA; Protein prenyltransferase alpha subunit repeat
      pfam13855
      Location:535 → 592
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VYB7.1

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