U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    Tsr1 Tsr1 ribosome assembly factor [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 40360, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tsr1provided by FlyBase
    Official Full Name
    Tsr1 ribosome assembly factorprovided by FlyBase
    Primary source
    FLYBASE:FBgn0037073
    Locus tag
    Dmel_CG7338
    See related
    AllianceGenome:FB:FBgn0037073
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG7338; Dmel\CG7338; tsr1
    Summary
    Predicted to enable GTP binding activity; GTPase activity; and U3 snoRNA binding activity. Predicted to be involved in endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleolus. Is expressed in adult brain cell body rind and adult head. Orthologous to human TSR1 (TSR1 ribosome maturation factor). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Tsr1 in Genome Data Viewer
    Location:
    78C7-78C8; 3-47 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (21335215..21338232)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (21328315..21331332)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR45674 Neighboring gene Rab26 Neighboring gene antisense RNA:CR46068 Neighboring gene TBC1 domain family member 8/9 Neighboring gene uncharacterized protein Neighboring gene earthbound 2 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Interactions

    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables GTP binding  
    enables GTPase activity  
    enables U3 snoRNA binding  
    Component Evidence Code Pubs
    located_in nucleolus  
    located_in nucleus  

    General protein information

    Preferred Names
    Tsr1 ribosome assembly factor
    Names
    CG7338-PA
    Tsr1-PA
    ribosome assembly factor Tsr1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      21335215..21338232
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_141047.4 → NP_649304.1  Tsr1 ribosome assembly factor [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_649304.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B5RIG8, Q86PD4, Q95TR7, Q9VP47
      Related
      FBpp0077998
      Conserved Domains (2) summary
      COG5177
      Location:17 → 781
      COG5177; Uncharacterized conserved protein [Function unknown]
      pfam04950
      Location:493 → 781
      RIBIOP_C; 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
    External link. Please review our privacy policy.