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    CG12236 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 31523, updated on 9-Dec-2024

    Summary

    Official Symbol
    CG12236provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0029822
    Locus tag
    Dmel_CG12236
    See related
    AllianceGenome:FB:FBgn0029822
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    DDO; Dmel\CG12236
    Summary
    Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in embryonic brain; larval ventral nerve cord; and organism. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See CG12236 in Genome Data Viewer
    Location:
    5C7-5C7; 1-14 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (5908135..5913079)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (5802168..5807112)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene Actin 5C Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR44108 Neighboring gene Serine hydroxymethyl transferase Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables DNA-binding transcription repressor activity, RNA polymerase II-specific ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein
    Names
    CG12236-PA
    CG12236-PB

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      5908135..5913079
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_167054.2NP_727050.1  uncharacterized protein Dmel_CG12236, isoform A [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W458
      Related
      FBpp0070790
      Conserved Domains (4) summary
      smart00225
      Location:33116
      BTB; Broad-Complex, Tramtrack and Bric a brac
      sd00020
      Location:483512
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:22116
      BTB; BTB/POZ domain
      pfam06112
      Location:376467
      Herpes_capsid; Gammaherpesvirus capsid protein
    2. NM_132049.5NP_572277.2  uncharacterized protein Dmel_CG12236, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7YZ93
      Related
      FBpp0070791
      Conserved Domains (5) summary
      smart00225
      Location:33116
      BTB; Broad-Complex, Tramtrack and Bric a brac
      COG5048
      Location:417503
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:451471
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:478500
      zf-C2H2; Zinc finger, C2H2 type
      pfam00651
      Location:22116
      BTB; BTB/POZ domain