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    ELF4 EARLY FLOWERING-like protein (DUF1313) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818596, updated on 18-Sep-2024

    Summary

    Official Symbol
    ELF4
    Official Full Name
    EARLY FLOWERING-like protein (DUF1313)
    Primary source
    TAIR:AT2G40080
    Locus tag
    AT2G40080
    See related
    Araport:AT2G40080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EARLY FLOWERING 4; T28M21.24; T28M21_24
    Summary
    Encodes a novel nuclear 111 amino-acid phytochrome-regulated component of a negative feedback loop involving the circadian clock central oscillator components CCA1 and LHY. ELF4 is necessary for light-induced expression of both CCA1 and LHY, and conversely, CCA1 and LHY act negatively on light-induced ELF4 expression. ELF4 promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. It is involved in the phyB-mediated constant red light induced seedling de-etiolation process and may function to coregulate the expression of a subset of phyB-regulated genes.
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    Genomic context

    See ELF4 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (16734294..16734953, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene Clathrin light chain protein Neighboring gene flocculation FLO11-like protein Neighboring gene ncRNA Neighboring gene uncharacterized protein

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    General gene information

    NM_129566.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus PubMed 
    located_in nucleus  

    General protein information

    Preferred Names
    EARLY FLOWERING-like protein (DUF1313)
    NP_565922.1
    • EARLY FLOWERING 4 (ELF4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741); BEST Arabidopsis thaliana protein match is: ELF4-like 1 (TAIR:AT2G29950.1); Has 150 Blast hits to 149 proteins in 35 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16734294..16734953 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129566.2 → NP_565922.1  EARLY FLOWERING-like protein (DUF1313) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565922.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04211
      UniProtKB/TrEMBL
      A0A178VRH7, A0A5S9X658, A0A654F1T6
      Conserved Domains (1) summary
      pfam07011
      Location:20 → 95
      DUF1313; Protein of unknown function (DUF1313)
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