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    ARF10 auxin response factor 10 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817382, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ARF10
    Official Full Name
    auxin response factor 10
    Primary source
    TAIR:AT2G28350
    Locus tag
    AT2G28350
    See related
    Araport:AT2G28350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    auxin response factor 10; T1B3.13; T1B3_13
    Summary
    Involved in root cap cell differentiation.
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    Genomic context

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    See ARF10 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (12113889..12116957)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene GATA transcription factor 13 Neighboring gene low-molecular-weight cysteine-rich 5 Neighboring gene SIT4 phosphatase-associated family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Hormone synergy: Auxin and jasmonate boost abscisic acid signaling via ARF10 and ARF16. Bascom C. Plant Cell, 2023 Mar 15. PMID 36651138, Free PMC Article
    2. Proper regeneration from in vitro cultured Arabidopsis thaliana requires the microRNA-directed action of an auxin response factor. Qiao M, et al. Plant J, 2012 Jul. PMID 22335436
    3. Auxin controls seed dormancy through stimulation of abscisic acid signaling by inducing ARF-mediated ABI3 activation in Arabidopsis. Liu X, et al. Proc Natl Acad Sci U S A, 2013 Sep 17. PMID 23986496, Free PMC Article
    4. Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis. Wang JW, et al. Plant Cell, 2005 Aug. PMID 16006581, Free PMC Article
    5. MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes. Mallory AC, et al. Plant Cell, 2005 May. PMID 15829600, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Hormone synergy: Auxin and jasmonate boost abscisic acid signaling via ARF10 and ARF16.
      Title: Hormone synergy: Auxin and jasmonate boost abscisic acid signaling via ARF10 and ARF16.
    2. Auxin recruits AUXIN RESPONSE FACTOR 10 and AUXIN RESPONSE FACTOR 16 to control the expression of ABI3 during seed germination.
      Title: Auxin controls seed dormancy through stimulation of abscisic acid signaling by inducing ARF-mediated ABI3 activation in Arabidopsis.
    3. miR160 negatively affects the expression of ARF10 during shoot regeneration.
      Title: Proper regeneration from in vitro cultured Arabidopsis thaliana requires the microRNA-directed action of an auxin response factor.
    4. Phenotypic plasticity of adventitious rooting is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance. Repressor/Activator Balance Is Unaltered by Disruptions to ARF10 and ARF16.
      Title: Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance.
    5. negative regulation of ARF10 by miR160 plays a critical role in seed germination and post-embryonic developmental programs
      Title: Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post-germination stages.
    6. In root, auxin and miR160 regulate the expression of ARF10 genes independently, generating a pattern consistent with root cap development.
      Title: Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_001336164.1
    NM_128394.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables miRNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within abscisic acid-activated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within auxin-activated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within cell division IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within developmental growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within fruit development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pattern specification process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within petal development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of anthocyanin biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to carbohydrate IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within root cap development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within root cap development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within sepal development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    auxin response factor 10
    NP_180402.1
    • auxin response factor 10 (ARF10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, miRNA binding; INVOLVED IN: in 13 processes; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 16 (TAIR:AT4G30080.1); Has 1499 Blast hits to 1393 proteins in 79 species: Archae - 0; Bacteria - 4; Metazoa - 43; Fungi - 0; Plants - 1444; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12113889..12116957
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128394.5 → NP_180402.1  auxin response factor 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180402.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B2CTC0, B2CTC4, B2CTD5, B2CTE0, Q0WQZ3, Q9SKN5, Q9SQ86
      UniProtKB/TrEMBL
      A0A178VN78, A0A384K881, A0A5S9X282, C0SV66
      Conserved Domains (2) summary
      pfam02362
      Location:115 → 216
      B3; B3 DNA binding domain
      pfam06507
      Location:284 → 360
      Auxin_resp; Auxin response factor

    2. NM_001336164.1 → NP_001324968.1  auxin response factor 10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B1S1, A0A5S9X282
      Conserved Domains (2) summary
      pfam02362
      Location:115 → 216
      B3; B3 DNA binding domain
      pfam06507
      Location:284 → 360
      Auxin_resp; Auxin response factor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SKN5.1

    Gene LinkOut

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