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Arabidopsis thaliana auxin response factor 10 (ARF10), mRNA

NCBI Reference Sequence: NM_128394.5

FASTA Graphics 

LOCUS       NM_128394               2801 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana auxin response factor 10 (ARF10), mRNA.
ACCESSION   NM_128394
VERSION     NM_128394.5
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2801)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (bases 1 to 2801)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2801)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2801)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003071).
            
            On Sep 12, 2016 this sequence version replaced NM_128394.4.
FEATURES             Location/Qualifiers
     source          1..2801
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     gene            1..2801
                     /gene="ARF10"
                     /locus_tag="AT2G28350"
                     /gene_synonym="auxin response factor 10; T1B3.13; T1B3_13"
                     /note="Involved in root cap cell differentiation."
                     /db_xref="Araport:AT2G28350"
                     /db_xref="GeneID:817382"
                     /db_xref="TAIR:AT2G28350"
     CDS             443..2524
                     /gene="ARF10"
                     /locus_tag="AT2G28350"
                     /gene_synonym="auxin response factor 10; T1B3.13; T1B3_13"
                     /inference="Similar to RNA sequence,
                     EST:INSD:BP807255.1,INSD:EL038998.1,INSD:DR383415.1,
                     INSD:EG486289.1,INSD:AU227786.1,INSD:DR365696.1,
                     INSD:AV532837.1,INSD:AV441987.1,INSD:ES166173.1,
                     INSD:EL207886.1,INSD:AV439502.1,INSD:DR365697.1,
                     INSD:EG486290.1,INSD:AU236801.1,INSD:Z25611.1,
                     INSD:BP608235.1,INSD:DR365694.1,INSD:EG486287.1,
                     INSD:EL297446.1,INSD:Z30501.1,INSD:DR365692.1,
                     INSD:BP619818.1,INSD:BP588524.1,INSD:T44526.1,
                     INSD:R65265.1,INSD:BP620756.1,INSD:BP606820.1,
                     INSD:ES190864.1,INSD:AV532207.1,INSD:EG486288.1,
                     INSD:BP612140.1,INSD:DR365695.1,INSD:BP809220.1,
                     INSD:EL297758.1,INSD:BP588290.1,INSD:DR355797.1,
                     INSD:DR365693.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AF325073.1,INSD:AK228534.1,INSD:AF336919.1,
                     INSD:AF099735.1"
                     /note="auxin response factor 10 (ARF10); FUNCTIONS IN:
                     sequence-specific DNA binding transcription factor
                     activity, miRNA binding; INVOLVED IN: in 13 processes;
                     LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures;
                     EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
                     DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525),
                     Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA
                     protein (InterPro:IPR003311), Auxin response factor
                     (InterPro:IPR010525); BEST Arabidopsis thaliana protein
                     match is: auxin response factor 16 (TAIR:AT4G30080.1); Has
                     1499 Blast hits to 1393 proteins in 79 species: Archae -
                     0; Bacteria - 4; Metazoa - 43; Fungi - 0; Plants - 1444;
                     Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink)."
                     /codon_start=1
                     /product="auxin response factor 10"
                     /protein_id="NP_180402.1"
                     /db_xref="Araport:AT2G28350"
                     /db_xref="GeneID:817382"
                     /db_xref="TAIR:AT2G28350"
                     /translation="MEQEKSLDPQLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPP
                     DFHAPRVPPLILCRVVSVKFLADAETDEVFAKITLLPLPGNDLDLENDAVLGLTPPSS
                     DGNGNGKEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDI
                     HGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFLRSESGDLCVGIRRAKR
                     GGLGSNAGSDNPYPGFSGFLRDDESTTTTSKLMMMKRNGNNDGNAAATGRVRVEAVAE
                     AVARAACGQAFEVVYYPRASTPEFCVKAADVRSAMRIRWCSGMRFKMAFETEDSSRIS
                     WFMGTVSAVQVADPIRWPNSPWRLLQVAWDEPDLLQNVKRVSPWLVELVSNMPTIHLS
                     PFSPRKKIRIPQPFEFPFHGTKFPIFSPGFANNGGGESMCYLSNDNNNAPAGIQGARQ
                     AQQLFGSPSPSLLSDLNLSSYTGNNKLHSPAMFLSSFNPRHHHYQARDSENSNNISCS
                     LTMGNPAMVQDKKKSVGSVKTHQFVLFGQPILTEQQVMNRKRFLEEEAEAEEEKGLVA
                     RGLTWNYSLQGLETGHCKVFMESEDVGRTLDLSVIGSYQELYRKLAEMFHIEERSDLL
                     THVVYRDANGVIKRIGDEPFSDFMKATKRLTIKMDIGGDNVRKTWITGIRTGENGIDA
                     STKTGPLSIFA"
ORIGIN      
        1 taatctctct ggtttgtttg gttcttgttt ctgtatacat cattactaaa gagaaaaaca
       61 agatgtttat ttattacgat ggtcttgtcc gtacctgatt atagcatctc tctctatctc
      121 tctcttcttc ttctacgatc tgatcagcca ttaaagcttt ttcccccttc actattatac
      181 ctcttttgaa gtgaaacaaa atcataaaag tcgaaacttt actgtttcct ctgcaaattt
      241 aaactctaat ctctctctct ctctctatct ctttcacttc gctttctcta tttcccctga
      301 aaccgttctt gtctctctct ctctctctct ctctcttctt ctctgctcaa gacaagaact
      361 tgatgttcat gtcttgaaac ttaacaaagt attgatcttt ccttttaagt aaagaatttg
      421 ggggttacac aacttcgtct agatggagca agagaaaagc ttggatccac aactatggca
      481 tgcttgtgca ggatcaatgg ttcaaatccc ttcactgaat tcaacggttt tttacttcgc
      541 tcaaggccac acagagcacg ctcacgcgcc tcctgatttt cacgcgccgc gcgttccacc
      601 tcttatcctc tgtcgtgtcg tctccgtgaa gttcctcgcc gacgctgaaa cagacgaagt
      661 ttttgctaaa attacgcttt tgccacttcc gggaaacgac ttggatctag aaaacgacgc
      721 cgttttgggt ctaactcctc cttcttctga cggtaacggt aacggtaaag agaaaccggc
      781 gtctttcgct aaaacgttaa cgcagtctga cgctaataac ggcggtggtt tctccgttcc
      841 acgttattgc gccgagacga ttttcccgcg gcttgattac tcggcggagc caccggttca
      901 aaccgtgatt gctaaagaca tccacggcga gacttggaaa ttccggcata tttacagagg
      961 aacacctcgc cgtcatctcc taaccaccgg ttggagcact ttcgttaacc agaagaaact
     1021 aatcgccgga gactcaatcg tcttcctccg ttctgaatcc ggtgacctct gcgtcggaat
     1081 ccgccgcgct aaacgcggcg gtctcggatc taacgcagga tccgacaatc cttaccctgg
     1141 attctccggt ttcctccgtg acgacgagtc aacaacaaca acatcgaagc taatgatgat
     1201 gaaacgcaac ggaaacaacg acggaaacgc cgcggctaca gggagggtta gagtagaagc
     1261 agtagcggaa gcggtggcgc gtgcagcgtg tggacaagcg tttgaggttg tttattatcc
     1321 acgcgctagt acaccggagt tttgcgtaaa agcagctgat gttagatcag caatgaggat
     1381 aagatggtgt agtggtatgc gttttaaaat ggcgtttgaa acagaggatt cttctagaat
     1441 cagttggttt atgggtactg tctccgccgt tcaagtcgct gatccaattc gttggcctaa
     1501 ttcaccatgg cgtctccttc aggtagcttg ggacgaaccg gatttgttac aaaacgttaa
     1561 gcgggttagt ccgtggttag tcgaattggt atcgaacatg cctacaatac atttatctcc
     1621 attctctccg aggaagaaga ttaggattcc gcagccattt gagtttccat tccacggtac
     1681 taaattcccg attttctccc cgggattcgc caacaatggc ggtggcgagt ccatgtgtta
     1741 tctgtcaaac gacaacaata atgctcctgc aggaatacag ggagccaggc aagctcaaca
     1801 actcttcgga tcaccatctc cgtctttgtt gtctgatctc aatcttagta gttacaccgg
     1861 taacaacaag ttacattctc cggcgatgtt tctatcgagt ttcaacccga ggcatcatca
     1921 ttatcaggct agggatagtg agaatagtaa taacatttcg tgttctttaa ctatggggaa
     1981 tcctgctatg gttcaggata agaagaagtc tgttggttcg gttaagactc atcagttcgt
     2041 gttgttcggt caaccgattt taaccgaaca gcaagttatg aaccgaaaac ggtttttgga
     2101 agaagaggcg gaagcggagg aggagaaagg tttagtggct cgtgggttaa catggaatta
     2161 tagtttgcaa ggacttgaga cgggtcattg taaagttttc atggaatctg aggatgttgg
     2221 acgcacactc gatctctcgg ttattggctc gtaccaagaa ttgtaccgga aattggctga
     2281 gatgtttcat atagaagaga ggtcggattt gttgactcat gttgtgtacc gggatgcaaa
     2341 tggtgttatc aaacgtattg gagacgaacc tttcagtgat ttcatgaaag caactaaacg
     2401 gctaacaatc aagatggata ttggtggcga caacgtgaga aagacgtgga taaccggaat
     2461 caggactggt gaaaatggta tagacgcttc tacgaagact ggtccgctca gcatcttcgc
     2521 ttgaacttga agcatattga ggaataagca gtggcctttg ttttgaacct aattttattt
     2581 ctgtctttaa ttctcttttt tccctatttt aaatcctttt tttgctggtc ttttgtgtgt
     2641 aacaaaccat tcccaagtgt taccaaaagt actctaattg gtatttgaat ttatttgttt
     2701 tggttgcaag ttgtatatga taatcaaaga acctgccata tcacttggta atacctagca
     2761 aaagctaaat ttgaagaaga gactattatg agtaaaatgt g
//
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