LOCUS NM_128394 2801 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana auxin response factor 10 (ARF10), mRNA.
ACCESSION NM_128394
VERSION NM_128394.5
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 2801)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 2801)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2801)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 2801)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003071).
On Sep 12, 2016 this sequence version replaced NM_128394.4.
FEATURES Location/Qualifiers
source 1..2801
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
gene 1..2801
/gene="ARF10"
/locus_tag="AT2G28350"
/gene_synonym="auxin response factor 10; T1B3.13; T1B3_13"
/note="Involved in root cap cell differentiation."
/db_xref="Araport:AT2G28350"
/db_xref="GeneID:817382"
/db_xref="TAIR:AT2G28350"
CDS 443..2524
/gene="ARF10"
/locus_tag="AT2G28350"
/gene_synonym="auxin response factor 10; T1B3.13; T1B3_13"
/inference="Similar to RNA sequence,
EST:INSD:BP807255.1,INSD:EL038998.1,INSD:DR383415.1,
INSD:EG486289.1,INSD:AU227786.1,INSD:DR365696.1,
INSD:AV532837.1,INSD:AV441987.1,INSD:ES166173.1,
INSD:EL207886.1,INSD:AV439502.1,INSD:DR365697.1,
INSD:EG486290.1,INSD:AU236801.1,INSD:Z25611.1,
INSD:BP608235.1,INSD:DR365694.1,INSD:EG486287.1,
INSD:EL297446.1,INSD:Z30501.1,INSD:DR365692.1,
INSD:BP619818.1,INSD:BP588524.1,INSD:T44526.1,
INSD:R65265.1,INSD:BP620756.1,INSD:BP606820.1,
INSD:ES190864.1,INSD:AV532207.1,INSD:EG486288.1,
INSD:BP612140.1,INSD:DR365695.1,INSD:BP809220.1,
INSD:EL297758.1,INSD:BP588290.1,INSD:DR355797.1,
INSD:DR365693.1"
/inference="similar to RNA sequence,
mRNA:INSD:AF325073.1,INSD:AK228534.1,INSD:AF336919.1,
INSD:AF099735.1"
/note="auxin response factor 10 (ARF10); FUNCTIONS IN:
sequence-specific DNA binding transcription factor
activity, miRNA binding; INVOLVED IN: in 13 processes;
LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525),
Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA
protein (InterPro:IPR003311), Auxin response factor
(InterPro:IPR010525); BEST Arabidopsis thaliana protein
match is: auxin response factor 16 (TAIR:AT4G30080.1); Has
1499 Blast hits to 1393 proteins in 79 species: Archae -
0; Bacteria - 4; Metazoa - 43; Fungi - 0; Plants - 1444;
Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink)."
/codon_start=1
/product="auxin response factor 10"
/protein_id="NP_180402.1"
/db_xref="Araport:AT2G28350"
/db_xref="GeneID:817382"
/db_xref="TAIR:AT2G28350"
/translation="MEQEKSLDPQLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPP
DFHAPRVPPLILCRVVSVKFLADAETDEVFAKITLLPLPGNDLDLENDAVLGLTPPSS
DGNGNGKEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDI
HGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFLRSESGDLCVGIRRAKR
GGLGSNAGSDNPYPGFSGFLRDDESTTTTSKLMMMKRNGNNDGNAAATGRVRVEAVAE
AVARAACGQAFEVVYYPRASTPEFCVKAADVRSAMRIRWCSGMRFKMAFETEDSSRIS
WFMGTVSAVQVADPIRWPNSPWRLLQVAWDEPDLLQNVKRVSPWLVELVSNMPTIHLS
PFSPRKKIRIPQPFEFPFHGTKFPIFSPGFANNGGGESMCYLSNDNNNAPAGIQGARQ
AQQLFGSPSPSLLSDLNLSSYTGNNKLHSPAMFLSSFNPRHHHYQARDSENSNNISCS
LTMGNPAMVQDKKKSVGSVKTHQFVLFGQPILTEQQVMNRKRFLEEEAEAEEEKGLVA
RGLTWNYSLQGLETGHCKVFMESEDVGRTLDLSVIGSYQELYRKLAEMFHIEERSDLL
THVVYRDANGVIKRIGDEPFSDFMKATKRLTIKMDIGGDNVRKTWITGIRTGENGIDA
STKTGPLSIFA"
ORIGIN
1 taatctctct ggtttgtttg gttcttgttt ctgtatacat cattactaaa gagaaaaaca
61 agatgtttat ttattacgat ggtcttgtcc gtacctgatt atagcatctc tctctatctc
121 tctcttcttc ttctacgatc tgatcagcca ttaaagcttt ttcccccttc actattatac
181 ctcttttgaa gtgaaacaaa atcataaaag tcgaaacttt actgtttcct ctgcaaattt
241 aaactctaat ctctctctct ctctctatct ctttcacttc gctttctcta tttcccctga
301 aaccgttctt gtctctctct ctctctctct ctctcttctt ctctgctcaa gacaagaact
361 tgatgttcat gtcttgaaac ttaacaaagt attgatcttt ccttttaagt aaagaatttg
421 ggggttacac aacttcgtct agatggagca agagaaaagc ttggatccac aactatggca
481 tgcttgtgca ggatcaatgg ttcaaatccc ttcactgaat tcaacggttt tttacttcgc
541 tcaaggccac acagagcacg ctcacgcgcc tcctgatttt cacgcgccgc gcgttccacc
601 tcttatcctc tgtcgtgtcg tctccgtgaa gttcctcgcc gacgctgaaa cagacgaagt
661 ttttgctaaa attacgcttt tgccacttcc gggaaacgac ttggatctag aaaacgacgc
721 cgttttgggt ctaactcctc cttcttctga cggtaacggt aacggtaaag agaaaccggc
781 gtctttcgct aaaacgttaa cgcagtctga cgctaataac ggcggtggtt tctccgttcc
841 acgttattgc gccgagacga ttttcccgcg gcttgattac tcggcggagc caccggttca
901 aaccgtgatt gctaaagaca tccacggcga gacttggaaa ttccggcata tttacagagg
961 aacacctcgc cgtcatctcc taaccaccgg ttggagcact ttcgttaacc agaagaaact
1021 aatcgccgga gactcaatcg tcttcctccg ttctgaatcc ggtgacctct gcgtcggaat
1081 ccgccgcgct aaacgcggcg gtctcggatc taacgcagga tccgacaatc cttaccctgg
1141 attctccggt ttcctccgtg acgacgagtc aacaacaaca acatcgaagc taatgatgat
1201 gaaacgcaac ggaaacaacg acggaaacgc cgcggctaca gggagggtta gagtagaagc
1261 agtagcggaa gcggtggcgc gtgcagcgtg tggacaagcg tttgaggttg tttattatcc
1321 acgcgctagt acaccggagt tttgcgtaaa agcagctgat gttagatcag caatgaggat
1381 aagatggtgt agtggtatgc gttttaaaat ggcgtttgaa acagaggatt cttctagaat
1441 cagttggttt atgggtactg tctccgccgt tcaagtcgct gatccaattc gttggcctaa
1501 ttcaccatgg cgtctccttc aggtagcttg ggacgaaccg gatttgttac aaaacgttaa
1561 gcgggttagt ccgtggttag tcgaattggt atcgaacatg cctacaatac atttatctcc
1621 attctctccg aggaagaaga ttaggattcc gcagccattt gagtttccat tccacggtac
1681 taaattcccg attttctccc cgggattcgc caacaatggc ggtggcgagt ccatgtgtta
1741 tctgtcaaac gacaacaata atgctcctgc aggaatacag ggagccaggc aagctcaaca
1801 actcttcgga tcaccatctc cgtctttgtt gtctgatctc aatcttagta gttacaccgg
1861 taacaacaag ttacattctc cggcgatgtt tctatcgagt ttcaacccga ggcatcatca
1921 ttatcaggct agggatagtg agaatagtaa taacatttcg tgttctttaa ctatggggaa
1981 tcctgctatg gttcaggata agaagaagtc tgttggttcg gttaagactc atcagttcgt
2041 gttgttcggt caaccgattt taaccgaaca gcaagttatg aaccgaaaac ggtttttgga
2101 agaagaggcg gaagcggagg aggagaaagg tttagtggct cgtgggttaa catggaatta
2161 tagtttgcaa ggacttgaga cgggtcattg taaagttttc atggaatctg aggatgttgg
2221 acgcacactc gatctctcgg ttattggctc gtaccaagaa ttgtaccgga aattggctga
2281 gatgtttcat atagaagaga ggtcggattt gttgactcat gttgtgtacc gggatgcaaa
2341 tggtgttatc aaacgtattg gagacgaacc tttcagtgat ttcatgaaag caactaaacg
2401 gctaacaatc aagatggata ttggtggcga caacgtgaga aagacgtgga taaccggaat
2461 caggactggt gaaaatggta tagacgcttc tacgaagact ggtccgctca gcatcttcgc
2521 ttgaacttga agcatattga ggaataagca gtggcctttg ttttgaacct aattttattt
2581 ctgtctttaa ttctcttttt tccctatttt aaatcctttt tttgctggtc ttttgtgtgt
2641 aacaaaccat tcccaagtgt taccaaaagt actctaattg gtatttgaat ttatttgttt
2701 tggttgcaag ttgtatatga taatcaaaga acctgccata tcacttggta atacctagca
2761 aaagctaaat ttgaagaaga gactattatg agtaaaatgt g
//