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    F-box/FBD/LRR protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824110, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box/FBD/LRR protein
    Primary source
    TAIR:AT3G49480
    Locus tag
    AT3G49480
    See related
    Araport:AT3G49480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (18342544..18344137, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene 60S acidic ribosomal-like protein Neighboring gene nascent polypeptide-associated complex subunit alpha-like protein 2 Neighboring gene uncharacterized protein Neighboring gene RNA-dependent RNA polymerase 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. F-Box Gene D5RF Is Regulated by Agrobacterium Virulence Protein VirD5 and Essential for Agrobacterium-Mediated Plant Transformation. Zhang S, et al. Int J Mol Sci, 2020 Sep 14. PMID 32937889, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    F-box/FBD/LRR protein
    NP_190517.1
    • Protein with RNI-like/FBD-like domains; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G05080.1); Has 625 Blast hits to 611 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 623; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18342544..18344137 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339422.1 → NP_001327389.1  F-box/FBD/LRR protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IXY3, Q9CA04, Q9SCL0
      UniProtKB/TrEMBL
      A0A654FHL8

    2. NM_114808.1 → NP_190517.1  F-box/FBD/LRR protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190517.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFX2
      Conserved Domains (3) summary
      smart00579
      Location:232 → 298
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:11 → 32
      LRR_2; leucine-rich repeat [structural motif]
      pfam07723
      Location:32 → 57
      LRR_2; Leucine Rich Repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CA04.3

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