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Conserved domains on  [gi|15229151|ref|NP_190517|]
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F-box/FBD/LRR protein [Arabidopsis thaliana]

Protein Classification

LRR_2 and FBD domain-containing protein( domain architecture ID 10543680)

LRR_2 and FBD domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FBD smart00579
domain in FBox and BRCT domain containing plant proteins;
232-298 2.73e-18

domain in FBox and BRCT domain containing plant proteins;


:

Pssm-ID: 214730  Cd Length: 72  Bit Score: 77.57  E-value: 2.73e-18
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15229151    232 RCLSSHLEIFEWDGYVGREDEKKIIRYILENSKYLKTAGISPNSTFSGEEKQKMEELESMHRTPTSV 298
Cdd:smart00579   1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDEEKLEILKELLSLPRASSSC 67
LRR_2 pfam07723
Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected with the ...
 32-57 2.17e-05

Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected with the pfam00560 model.


:

Pssm-ID: 336782  Cd Length: 26  Bit Score: 40.45  E-value: 2.17e-05
                          10        20
                  ....*....|....*....|....*.
gi 15229151    32 SLRELDLFCVVYKDEDSHVKLLSSCP 57
Cdd:pfam07723   1 SLKTLHLDSVVFSDEDSLEKLLSGCP 26
 
Name Accession Description Interval E-value
FBD smart00579
domain in FBox and BRCT domain containing plant proteins;
232-298 2.73e-18

domain in FBox and BRCT domain containing plant proteins;


Pssm-ID: 214730  Cd Length: 72  Bit Score: 77.57  E-value: 2.73e-18
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15229151    232 RCLSSHLEIFEWDGYVGREDEKKIIRYILENSKYLKTAGISPNSTFSGEEKQKMEELESMHRTPTSV 298
Cdd:smart00579   1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDEEKLEILKELLSLPRASSSC 67
FBD pfam08387
FBD; This region is found in F-box (pfam00646) and other domain containing plant proteins; it ...
 227-271 1.35e-16

FBD; This region is found in F-box (pfam00646) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes. In fact, several family members are annotated as being similar to transcription factors.


Pssm-ID: 462458  Cd Length: 45  Bit Score: 71.98  E-value: 1.35e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 15229151   227 PSSIPRCLSSHLEIFEWDGYVGREDEKKIIRYILENSKYLKTAGI 271
Cdd:pfam08387   1 PSSVPECLLSSLETVEWRGYRGEEEEKEFAKYILENARVLKKATI 45
LRR_2 pfam07723
Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected with the ...
 32-57 2.17e-05

Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected with the pfam00560 model.


Pssm-ID: 336782  Cd Length: 26  Bit Score: 40.45  E-value: 2.17e-05
                          10        20
                  ....*....|....*....|....*.
gi 15229151    32 SLRELDLFCVVYKDEDSHVKLLSSCP 57
Cdd:pfam07723   1 SLKTLHLDSVVFSDEDSLEKLLSGCP 26
 
Name Accession Description Interval E-value
FBD smart00579
domain in FBox and BRCT domain containing plant proteins;
232-298 2.73e-18

domain in FBox and BRCT domain containing plant proteins;


Pssm-ID: 214730  Cd Length: 72  Bit Score: 77.57  E-value: 2.73e-18
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15229151    232 RCLSSHLEIFEWDGYVGREDEKKIIRYILENSKYLKTAGISPNSTFSGEEKQKMEELESMHRTPTSV 298
Cdd:smart00579   1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDEEKLEILKELLSLPRASSSC 67
FBD pfam08387
FBD; This region is found in F-box (pfam00646) and other domain containing plant proteins; it ...
 227-271 1.35e-16

FBD; This region is found in F-box (pfam00646) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes. In fact, several family members are annotated as being similar to transcription factors.


Pssm-ID: 462458  Cd Length: 45  Bit Score: 71.98  E-value: 1.35e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 15229151   227 PSSIPRCLSSHLEIFEWDGYVGREDEKKIIRYILENSKYLKTAGI 271
Cdd:pfam08387   1 PSSVPECLLSSLETVEWRGYRGEEEEKEFAKYILENARVLKKATI 45
LRR_2 pfam07723
Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected with the ...
 32-57 2.17e-05

Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected with the pfam00560 model.


Pssm-ID: 336782  Cd Length: 26  Bit Score: 40.45  E-value: 2.17e-05
                          10        20
                  ....*....|....*....|....*.
gi 15229151    32 SLRELDLFCVVYKDEDSHVKLLSSCP 57
Cdd:pfam07723   1 SLKTLHLDSVVFSDEDSLEKLLSGCP 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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