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    Rrp15p protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834877, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Rrp15p protein
    Primary source
    TAIR:AT5G48240
    Locus tag
    AT5G48240
    See related
    Araport:AT5G48240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MIF21.13; MIF21_13
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (19559201..19561374)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene prolamin-like protein (DUF1278) Neighboring gene Aldolase-type TIM barrel family protein Neighboring gene acetoacetyl-CoA thiolase 2 Neighboring gene B-box type zinc finger protein with CCT domain-containing protein Neighboring gene DUF868 family protein (DUF868) Neighboring gene uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An abscisic acid-responsive protein interaction network for sucrose non-fermenting related kinase1 in abiotic stress response. Carianopol CS, et al. Commun Biol, 2020 Mar 26. PMID 32218501, Free PMC Article
    2. A mesoscale abscisic acid hormone interactome reveals a dynamic signaling landscape in Arabidopsis. Lumba S, et al. Dev Cell, 2014 May 12. PMID 24823379
    3. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001125924.2
    NM_001161297.1
    NM_124199.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleolus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Rrp15p protein
    NP_001119396.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001154769.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 286 Blast hits to 283 proteins in 145 species: Archae - 0; Bacteria - 2; Metazoa - 103; Fungi - 97; Plants - 41; Viruses - 1; Other Eukaryotes - 42 (source: NCBI BLink).
    NP_199635.2
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 402 Blast hits to 382 proteins in 162 species: Archae - 0; Bacteria - 4; Metazoa - 139; Fungi - 111; Plants - 54; Viruses - 1; Other Eukaryotes - 93 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19559201..19561374
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124199.5 → NP_199635.2  Rrp15p protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199635.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UHE3, A0A5S9YCQ9, B3H5R1
      Conserved Domains (1) summary
      pfam07890
      Location:140 → 250
      Rrp15p; Rrp15p

    2. NM_001161297.1 → NP_001154769.1  Rrp15p protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154769.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UEK6, F4K087
      Conserved Domains (1) summary
      pfam07890
      Location:140 → 250
      Rrp15p; Rrp15p

    3. NM_001125924.2 → NP_001119396.1  Rrp15p protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119396.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UHE3, A0A5S9YCQ9, B6EUA7
      Conserved Domains (1) summary
      pfam07890
      Location:140 → 250
      Rrp15p; Rrp15p
    Nucleotide Protein
    Heading Accession and Version

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