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Conserved domains on  [gi|238481511|ref|NP_001154769|]
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Rrp15p protein [Arabidopsis thaliana]

Protein Classification

RRP15 family protein( domain architecture ID 10545890)

RRP15 family protein such as Saccharomyces cerevisiae ribosomal RNA-processing protein 15, a component of pre-ribosomal particles required for 60S ribosome subunit maturation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Rrp15p pfam07890
Rrp15p; Rrp15p is required for the formation of 60S ribosomal subunits.
 140-250 2.90e-20

Rrp15p; Rrp15p is required for the formation of 60S ribosomal subunits.


:

Pssm-ID: 462305  Cd Length: 126  Bit Score: 85.40  E-value: 2.90e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238481511  140 KKTKGDDTLGPVLSAHKHL--IGEKLAEDEAEKKAKGQARKAKHLIAEKGHVK-----PGSYLDSHEKILIGVATKGVVK 212
Cdd:pfam07890   1 SKLPASKRKDPILSRSKKAakKLKKLEDEKLEAKAKKALRAEKKEAEEKGRVKdvldgWTEETAERERRLRKVATRGVVK 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 238481511  213 LFNAVNKAQ-HAQKGLNPSRS------KDAKVLKKRRKEAFLSEL 250
Cdd:pfam07890  81 LFNAVRAAQvKAEKALKEAGKlegvqkKKEKVLKELSKEKFLDLL 125
 
Name Accession Description Interval E-value
Rrp15p pfam07890
Rrp15p; Rrp15p is required for the formation of 60S ribosomal subunits.
 140-250 2.90e-20

Rrp15p; Rrp15p is required for the formation of 60S ribosomal subunits.


Pssm-ID: 462305  Cd Length: 126  Bit Score: 85.40  E-value: 2.90e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238481511  140 KKTKGDDTLGPVLSAHKHL--IGEKLAEDEAEKKAKGQARKAKHLIAEKGHVK-----PGSYLDSHEKILIGVATKGVVK 212
Cdd:pfam07890   1 SKLPASKRKDPILSRSKKAakKLKKLEDEKLEAKAKKALRAEKKEAEEKGRVKdvldgWTEETAERERRLRKVATRGVVK 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 238481511  213 LFNAVNKAQ-HAQKGLNPSRS------KDAKVLKKRRKEAFLSEL 250
Cdd:pfam07890  81 LFNAVRAAQvKAEKALKEAGKlegvqkKKEKVLKELSKEKFLDLL 125
 
Name Accession Description Interval E-value
Rrp15p pfam07890
Rrp15p; Rrp15p is required for the formation of 60S ribosomal subunits.
 140-250 2.90e-20

Rrp15p; Rrp15p is required for the formation of 60S ribosomal subunits.


Pssm-ID: 462305  Cd Length: 126  Bit Score: 85.40  E-value: 2.90e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238481511  140 KKTKGDDTLGPVLSAHKHL--IGEKLAEDEAEKKAKGQARKAKHLIAEKGHVK-----PGSYLDSHEKILIGVATKGVVK 212
Cdd:pfam07890   1 SKLPASKRKDPILSRSKKAakKLKKLEDEKLEAKAKKALRAEKKEAEEKGRVKdvldgWTEETAERERRLRKVATRGVVK 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 238481511  213 LFNAVNKAQ-HAQKGLNPSRS------KDAKVLKKRRKEAFLSEL 250
Cdd:pfam07890  81 LFNAVRAAQvKAEKALKEAGKlegvqkKKEKVLKELSKEKFLDLL 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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