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    O-Glycosyl hydrolases family 17 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835611, updated on 18-Sep-2024

    Summary

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    Official Full Name
    O-Glycosyl hydrolases family 17 protein
    Primary source
    TAIR:AT5G55180
    Locus tag
    AT5G55180
    See related
    Araport:AT5G55180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MCO15.13; MCO15_13
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (22388521..22390763)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene small ubiquitin-like modifier 2 Neighboring gene small ubiquitin-like modifier 3 Neighboring gene RAN GTPase 3 Neighboring gene Co-chaperone GrpE family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes. Singh R, et al. Front Plant Sci, 2020. PMID 32194606, Free PMC Article
    2. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001161308.1
    NM_124900.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glucan endo-1,3-beta-D-glucosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    O-Glycosyl hydrolases family 17 protein
    NP_001154780.1
    • O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT4G26830.1); Has 563 Blast hits to 555 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 554; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
    NP_568822.1
    • O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT4G26830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22388521..22390763
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124900.4 → NP_568822.1  O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568822.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UBL0, A0A5S9YGI0, A0A654GBB4, A0A7G2FMP1, Q0V7P5, Q8S9I6
      Conserved Domains (2) summary
      smart00768
      Location:371 → 456
      X8; Possibly involved in carbohydrate binding
      cl23725
      Location:27 → 344
      Glyco_hydro; Glycosyl hydrolases

    2. NM_001161308.1 → NP_001154780.1  O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154780.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UBL0, F4K3D8
      Conserved Domains (2) summary
      smart00768
      Location:371 → 450
      X8; Possibly involved in carbohydrate binding
      cl23725
      Location:27 → 344
      Glyco_hydro_1; Glycosyl hydrolase family 1
    Nucleotide Protein
    Heading Accession and Version

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