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Conserved domains on  [gi|18423719|ref|NP_568822|]
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O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]

Protein Classification

glycoside hydrolase family 17 protein( domain architecture ID 11042916)

glycoside hydrolase family 17 protein with a C-terminal X8 family carbohydrate-binding domain, such as glucan endo-1,3-beta-glucosidase, which breaks (1->3)-beta-D-glucosidic linkages in (1->3)-beta-D-glucans

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Glyco_hydro super family cl23725
Glycosyl hydrolases; A functionally diverse superfamily containing glycosyl hydrolase families ...
27-344 3.17e-92

Glycosyl hydrolases; A functionally diverse superfamily containing glycosyl hydrolase families 1,5,10,17,44,72, and others.


The actual alignment was detected with superfamily member pfam00332:

Pssm-ID: 474034  Cd Length: 309  Bit Score: 281.70  E-value: 3.17e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18423719    27 IGVNYGRIADNLPAPEKVVELLKTQGINRIKLYDTETTVLTALANSGIKVVVSLPNENLASAAADQSYTDTWVQDNIKKY 106
Cdd:pfam00332   1 IGVNYGVKGNNLPSTCKVISLYKSNNIKDLRIYKPDTNVLNALAGSNIEVILNLPNQDLAALASFQSQAGGWVQDNIRPF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18423719   107 IPATDIEAIAVGNEvfVDPRNTT---TYLVPAMKNVQSSLVKFNLDKSIKISSPIALSALASSYPPSAGSFkPELIEPVI 183
Cdd:pfam00332  81 APKVKFKYIAVGNE--ISPGTSAgkyRFLVPAMANIYNALTAAGLSNKIKVSTSLVMGLLDNSYPPSYSTF-REETKPFV 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18423719   184 KPMLDLLRKTSSHLMVNAYPFFAYAANadKISLDYALFKENAGNvdsgNGLKYNSLLDAQIDAVFAAMSAVGFNDVKLVV 263
Cdd:pfam00332 158 DPINGFLAGTNSPLLVNIYPYFVYSNN--NVSLDYALFQGQSQV----NGLAYYNLFDAILDSVYFAQEKLGGTDIEIWV 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18423719   264 TETGWPSAGDEneiGAGSANAAAYNGGLVKRVltGNGTPLKPKEPLNVYLFALFNENQKTGPTSERNYGLFYPNENKVYD 343
Cdd:pfam00332 232 SETGWPSDGHP---GATLENAATYVRNLIQHV--KEGTPSKPGWGIETYVFAMFDENWKPGTSVEKHWGVFQPDKSPKYS 306

                  .
gi 18423719   344 V 344
Cdd:pfam00332 307 L 307
X8 smart00768
Possibly involved in carbohydrate binding; The X8 domain, which may be involved in ...
371-456 2.19e-40

Possibly involved in carbohydrate binding; The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.


:

Pssm-ID: 197867 [Multi-domain]  Cd Length: 85  Bit Score: 139.31  E-value: 2.19e-40
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18423719    371 TWCVANGKTTKEKLQEGLDYACGEGgADCRPIQPGATCYNPESLEAHASYAFNSYYQKNARGVGTCNFGGAAYVVSQPPK 450
Cdd:smart00768   1 LWCVAKPDADEAALQAALDYACGQG-ADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFSGTATITTTDPS 79

                   ....*.
gi 18423719    451 YGKCEF 456
Cdd:smart00768  80 TGSCKF 85
 
Name Accession Description Interval E-value
Glyco_hydro_17 pfam00332
Glycosyl hydrolases family 17;
27-344 3.17e-92

Glycosyl hydrolases family 17;


Pssm-ID: 366033  Cd Length: 309  Bit Score: 281.70  E-value: 3.17e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18423719    27 IGVNYGRIADNLPAPEKVVELLKTQGINRIKLYDTETTVLTALANSGIKVVVSLPNENLASAAADQSYTDTWVQDNIKKY 106
Cdd:pfam00332   1 IGVNYGVKGNNLPSTCKVISLYKSNNIKDLRIYKPDTNVLNALAGSNIEVILNLPNQDLAALASFQSQAGGWVQDNIRPF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18423719   107 IPATDIEAIAVGNEvfVDPRNTT---TYLVPAMKNVQSSLVKFNLDKSIKISSPIALSALASSYPPSAGSFkPELIEPVI 183
Cdd:pfam00332  81 APKVKFKYIAVGNE--ISPGTSAgkyRFLVPAMANIYNALTAAGLSNKIKVSTSLVMGLLDNSYPPSYSTF-REETKPFV 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18423719   184 KPMLDLLRKTSSHLMVNAYPFFAYAANadKISLDYALFKENAGNvdsgNGLKYNSLLDAQIDAVFAAMSAVGFNDVKLVV 263
Cdd:pfam00332 158 DPINGFLAGTNSPLLVNIYPYFVYSNN--NVSLDYALFQGQSQV----NGLAYYNLFDAILDSVYFAQEKLGGTDIEIWV 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18423719   264 TETGWPSAGDEneiGAGSANAAAYNGGLVKRVltGNGTPLKPKEPLNVYLFALFNENQKTGPTSERNYGLFYPNENKVYD 343
Cdd:pfam00332 232 SETGWPSDGHP---GATLENAATYVRNLIQHV--KEGTPSKPGWGIETYVFAMFDENWKPGTSVEKHWGVFQPDKSPKYS 306

                  .
gi 18423719   344 V 344
Cdd:pfam00332 307 L 307
X8 smart00768
Possibly involved in carbohydrate binding; The X8 domain, which may be involved in ...
371-456 2.19e-40

Possibly involved in carbohydrate binding; The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.


Pssm-ID: 197867 [Multi-domain]  Cd Length: 85  Bit Score: 139.31  E-value: 2.19e-40
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18423719    371 TWCVANGKTTKEKLQEGLDYACGEGgADCRPIQPGATCYNPESLEAHASYAFNSYYQKNARGVGTCNFGGAAYVVSQPPK 450
Cdd:smart00768   1 LWCVAKPDADEAALQAALDYACGQG-ADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFSGTATITTTDPS 79

                   ....*.
gi 18423719    451 YGKCEF 456
Cdd:smart00768  80 TGSCKF 85
X8 pfam07983
X8 domain; The X8 domain domain contains at least 6 conserved cysteine residues that ...
371-443 1.04e-27

X8 domain; The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteriztic of GPI-anchored domains.


Pssm-ID: 400371  Cd Length: 76  Bit Score: 104.99  E-value: 1.04e-27
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 18423719   371 TWCVANGKTTKEKLQEGLDYACGEggADCRPIQPGAT-----CYNPESLEAHASYAFNSYYQKNARGVGTCNFGGAAY 443
Cdd:pfam07983   1 LWCVAKDSVDDEDLQDLFDYACGQ--ADCSGIQANGTtgkygCYSPCTVKQHLSYAFNSYYQKQGKASSACDFSGSAT 76
Scw11 COG5309
Exo-beta-1,3-glucanase, GH17 family [Carbohydrate transport and metabolism];
112-334 2.54e-04

Exo-beta-1,3-glucanase, GH17 family [Carbohydrate transport and metabolism];


Pssm-ID: 444107  Cd Length: 512  Bit Score: 43.47  E-value: 2.54e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18423719 112 IEAIAVGNEVFVdpRNTTTylVPAM-KNVQSslVKfnldKSIKIssPIalsalasSY--PPSAGSFKPELIEPVikpmlD 188
Cdd:COG5309 131 VKRVIVGNEVLL--RGDLT--PEELiAYIRR--VK----AAVKV--PV-------TYadVWHFWLKHPELADAV-----D 186
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18423719 189 LLrktsshlMVNAYPFFayaanaDKISLDYALfkENAGNVdsgnglkYNSLLDAqidavfaamsavgFNDVKLVVTETGW 268
Cdd:COG5309 187 FI-------TIHILPYW------EGVPIERAL--DYAKDR-------YDEVRAA-------------FPGKPIIIGETGW 231
                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 18423719 269 PSAGDENEIGAGS-ANAAAYNGGLVKRVLtgngtplkpKEPLNVYLFALFNENQKTGP--TSERNYGLF 334
Cdd:COG5309 232 PSAGRQRGGAVPSeVNQARYLREFLAWAN---------EEGIDYFYFEAFDQPWKRALegTVGAYWGLF 291
 
Name Accession Description Interval E-value
Glyco_hydro_17 pfam00332
Glycosyl hydrolases family 17;
27-344 3.17e-92

Glycosyl hydrolases family 17;


Pssm-ID: 366033  Cd Length: 309  Bit Score: 281.70  E-value: 3.17e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18423719    27 IGVNYGRIADNLPAPEKVVELLKTQGINRIKLYDTETTVLTALANSGIKVVVSLPNENLASAAADQSYTDTWVQDNIKKY 106
Cdd:pfam00332   1 IGVNYGVKGNNLPSTCKVISLYKSNNIKDLRIYKPDTNVLNALAGSNIEVILNLPNQDLAALASFQSQAGGWVQDNIRPF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18423719   107 IPATDIEAIAVGNEvfVDPRNTT---TYLVPAMKNVQSSLVKFNLDKSIKISSPIALSALASSYPPSAGSFkPELIEPVI 183
Cdd:pfam00332  81 APKVKFKYIAVGNE--ISPGTSAgkyRFLVPAMANIYNALTAAGLSNKIKVSTSLVMGLLDNSYPPSYSTF-REETKPFV 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18423719   184 KPMLDLLRKTSSHLMVNAYPFFAYAANadKISLDYALFKENAGNvdsgNGLKYNSLLDAQIDAVFAAMSAVGFNDVKLVV 263
Cdd:pfam00332 158 DPINGFLAGTNSPLLVNIYPYFVYSNN--NVSLDYALFQGQSQV----NGLAYYNLFDAILDSVYFAQEKLGGTDIEIWV 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18423719   264 TETGWPSAGDEneiGAGSANAAAYNGGLVKRVltGNGTPLKPKEPLNVYLFALFNENQKTGPTSERNYGLFYPNENKVYD 343
Cdd:pfam00332 232 SETGWPSDGHP---GATLENAATYVRNLIQHV--KEGTPSKPGWGIETYVFAMFDENWKPGTSVEKHWGVFQPDKSPKYS 306

                  .
gi 18423719   344 V 344
Cdd:pfam00332 307 L 307
X8 smart00768
Possibly involved in carbohydrate binding; The X8 domain, which may be involved in ...
371-456 2.19e-40

Possibly involved in carbohydrate binding; The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.


Pssm-ID: 197867 [Multi-domain]  Cd Length: 85  Bit Score: 139.31  E-value: 2.19e-40
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18423719    371 TWCVANGKTTKEKLQEGLDYACGEGgADCRPIQPGATCYNPESLEAHASYAFNSYYQKNARGVGTCNFGGAAYVVSQPPK 450
Cdd:smart00768   1 LWCVAKPDADEAALQAALDYACGQG-ADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFSGTATITTTDPS 79

                   ....*.
gi 18423719    451 YGKCEF 456
Cdd:smart00768  80 TGSCKF 85
X8 pfam07983
X8 domain; The X8 domain domain contains at least 6 conserved cysteine residues that ...
371-443 1.04e-27

X8 domain; The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteriztic of GPI-anchored domains.


Pssm-ID: 400371  Cd Length: 76  Bit Score: 104.99  E-value: 1.04e-27
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 18423719   371 TWCVANGKTTKEKLQEGLDYACGEggADCRPIQPGAT-----CYNPESLEAHASYAFNSYYQKNARGVGTCNFGGAAY 443
Cdd:pfam07983   1 LWCVAKDSVDDEDLQDLFDYACGQ--ADCSGIQANGTtgkygCYSPCTVKQHLSYAFNSYYQKQGKASSACDFSGSAT 76
Scw11 COG5309
Exo-beta-1,3-glucanase, GH17 family [Carbohydrate transport and metabolism];
112-334 2.54e-04

Exo-beta-1,3-glucanase, GH17 family [Carbohydrate transport and metabolism];


Pssm-ID: 444107  Cd Length: 512  Bit Score: 43.47  E-value: 2.54e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18423719 112 IEAIAVGNEVFVdpRNTTTylVPAM-KNVQSslVKfnldKSIKIssPIalsalasSY--PPSAGSFKPELIEPVikpmlD 188
Cdd:COG5309 131 VKRVIVGNEVLL--RGDLT--PEELiAYIRR--VK----AAVKV--PV-------TYadVWHFWLKHPELADAV-----D 186
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18423719 189 LLrktsshlMVNAYPFFayaanaDKISLDYALfkENAGNVdsgnglkYNSLLDAqidavfaamsavgFNDVKLVVTETGW 268
Cdd:COG5309 187 FI-------TIHILPYW------EGVPIERAL--DYAKDR-------YDEVRAA-------------FPGKPIIIGETGW 231
                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 18423719 269 PSAGDENEIGAGS-ANAAAYNGGLVKRVLtgngtplkpKEPLNVYLFALFNENQKTGP--TSERNYGLF 334
Cdd:COG5309 232 PSAGRQRGGAVPSeVNQARYLREFLAWAN---------EEGIDYFYFEAFDQPWKRALegTVGAYWGLF 291
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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