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    DNA-binding bromodomain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842169, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA-binding bromodomain-containing protein
    Primary source
    TAIR:AT1G58025
    Locus tag
    AT1G58025
    See related
    Araport:AT1G58025
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T15M6.22; T15M6_22
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (21457667..21462243, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene pseudo Neighboring gene cationic amino acid transporter 2 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001198329.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA-binding bromodomain-containing protein
    NP_001185257.1
    • DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: nuclear protein X1 (TAIR:AT5G63320.1).
    NP_001185258.1
    • DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: nuclear protein X1 (TAIR:AT5G63320.1).
    NP_176101.3
    • DNA-binding bromodomain-containing protein; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: nuclear protein X1 (TAIR:AT5G63320.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      21457667..21462243 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198328.1 → NP_001185257.1  DNA-binding bromodomain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185257.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EJ92, F4I9P7
      Conserved Domains (1) summary
      cd05494
      Location:212 → 314
      Bromodomain_1; Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

    2. NM_001333814.1 → NP_001322913.1  DNA-binding bromodomain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EJ92, F4I9P9

    3. NM_001333813.1 → NP_001322912.1  DNA-binding bromodomain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EJ92, F4I9P9

    4. NM_104585.7 → NP_176101.3  DNA-binding bromodomain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176101.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EJ92, F4I9P8
      Conserved Domains (1) summary
      cd05494
      Location:212 → 314
      Bromodomain_1; Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

    5. NM_001333815.1 → NP_001322911.1  DNA-binding bromodomain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EJ92, F4I9P8

    6. NM_001198329.1 → NP_001185258.1  DNA-binding bromodomain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185258.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EJ92, F4I9P9
      Conserved Domains (1) summary
      cd05494
      Location:212 → 314
      Bromodomain_1; Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
    Nucleotide Protein
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