U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    ZAT6 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830313, updated on 18-Sep-2024

    Summary

    Official Symbol
    ZAT6
    Official Full Name
    6
    Primary source
    TAIR:AT5G04340
    Locus tag
    AT5G04340
    See related
    Araport:AT5G04340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtZAT6; C2H2; C2H2 ZINC FINGER TRANSCRIPTION FACTOR; COLD INDUCED ZINC FINGER PROTEIN 2; CZF2; T19N18.70; T19N18_70; zinc finger of Arabidopsis thaliana 6
    Summary
    putative c2h2 zinc finger transcription factor mRNA
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See ZAT6 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (1216058..1217362, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene Shugoshin C terminus Neighboring gene Cytochrome P450 superfamily protein Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene Plant self-incompatibility protein S1 family

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    General gene information

    NM_120516.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus PubMed 
    located_in nucleus  

    General protein information

    Preferred Names
    6
    NP_196054.1
    • zinc finger of Arabidopsis thaliana 6 (ZAT6); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: salt tolerance zinc finger (TAIR:AT1G27730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1216058..1217362 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120516.4 → NP_196054.1  6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196054.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22533, Q8GWG1
      UniProtKB/TrEMBL
      A0A178UKV2, A0A5S9Y1B1, A0A654FYM4
      Conserved Domains (1) summary
      pfam13912
      Location:88 → 114
      zf-C2H2_6; C2H2-type zinc finger
    External link. Please review our privacy policy.