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    IQD30 IQ-domain 30 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838465, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IQD30
    Official Full Name
    IQ-domain 30
    Primary source
    TAIR:AT1G18840
    Locus tag
    AT1G18840
    See related
    Araport:AT1G18840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6A14.7; F6A14_7; IQ-domain 30
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    Genomic context

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    See IQD30 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (6500803..6504567, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene mini zinc finger Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene WRKY DNA-binding protein 61

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001035990.2
    NM_101741.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    IQ-domain 30
    NP_001031067.1
    • IQ-domain 30 (IQD30); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 31 (TAIR:AT1G74690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_173318.2
    • IQ-domain 30 (IQD30); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 31 (TAIR:AT1G74690.1); Has 3694 Blast hits to 2988 proteins in 424 species: Archae - 6; Bacteria - 439; Metazoa - 902; Fungi - 265; Plants - 843; Viruses - 14; Other Eukaryotes - 1225 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6500803..6504567 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332375.1 → NP_001322630.1  IQ-domain 30 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DH53, Q2NND8, Q501D2, Q9M9V3
      UniProtKB/TrEMBL
      A0A178W2U4, A0A5S9V409, A0A7G2DU92
      Conserved Domains (3) summary
      PTZ00341
      Location:321 → 446
      PTZ00341; Ring-infected erythrocyte surface antigen; Provisional
      smart00015
      Location:107 → 129
      IQ; Calmodulin-binding motif
      pfam13178
      Location:485 → 551
      DUF4005; Protein of unknown function (DUF4005)

    2. NM_001035990.2 → NP_001031067.1  IQ-domain 30 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031067.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DH53, Q2NND8, Q501D2, Q9M9V3
      UniProtKB/TrEMBL
      A0A178W2U4, A0A5S9V409, A0A7G2DU92
      Conserved Domains (3) summary
      PTZ00341
      Location:321 → 446
      PTZ00341; Ring-infected erythrocyte surface antigen; Provisional
      smart00015
      Location:107 → 129
      IQ; Calmodulin-binding motif
      pfam13178
      Location:485 → 551
      DUF4005; Protein of unknown function (DUF4005)

    3. NM_101741.4 → NP_173318.2  IQ-domain 30 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173318.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DH53, Q2NND8, Q501D2, Q9M9V3
      UniProtKB/TrEMBL
      A0A178W2U4, A0A5S9V409, A0A7G2DU92
      Conserved Domains (3) summary
      PTZ00341
      Location:321 → 446
      PTZ00341; Ring-infected erythrocyte surface antigen; Provisional
      smart00015
      Location:107 → 129
      IQ; Calmodulin-binding motif
      pfam13178
      Location:485 → 551
      DUF4005; Protein of unknown function (DUF4005)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q501D2.1

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