U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TPPB trehalose-6-phosphate phosphatase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844144, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    TPPB
    Official Full Name
    trehalose-6-phosphate phosphatase
    Primary source
    TAIR:AT1G78090
    Locus tag
    AT1G78090
    See related
    Araport:AT1G78090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    Arabidopsis thaliana trehalose-6-phosphate phosphatase B; ATTPPB; T11I11.2; T11I11_2; trehalose-6-phosphate phosphatase; TREHALOSE-6-PHOSPHATE PHOSPHATASE; trehalose-6-phosphate phosphatase B
    Summary
    homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TPPB in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (29373803..29376639)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene pseudo Neighboring gene F-box family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Trehalose-6-phosphate phosphatases from Arabidopsis thaliana: identification by functional complementation of the yeast tps2 mutant. Vogel G, et al. Plant J, 1998 Mar. PMID 9681009
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_001334818.1
    NM_106458.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables trehalose-phosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables trehalose-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within trehalose biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in trehalose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    trehalose-6-phosphate phosphatase
    NP_177932.1
    • trehalose-6-phosphate phosphatase (TPPB); CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT1G22210.1); Has 2381 Blast hits to 2375 proteins in 857 species: Archae - 41; Bacteria - 1374; Metazoa - 220; Fungi - 153; Plants - 455; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29373803..29376639
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106458.4 → NP_177932.1  trehalose-6-phosphate phosphatase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177932.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64897, Q9C9S4
      UniProtKB/TrEMBL
      A0A178W8D8, A0A5S9WVD3, A0A654EQ74
      Conserved Domains (1) summary
      cl21460
      Location:1 → 368
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    2. NM_001334818.1 → NP_001322316.1  trehalose-6-phosphate phosphatase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W8D8, A0A1P8ATL8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C9S4.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools