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Arabidopsis thaliana trehalose-6-phosphate phosphatase (TPPB), mRNA

NCBI Reference Sequence: NM_106458.4

FASTA Graphics 

LOCUS       NM_106458               1621 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana trehalose-6-phosphate phosphatase (TPPB),
            mRNA.
ACCESSION   NM_106458
VERSION     NM_106458.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1621)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (bases 1 to 1621)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1621)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1621)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (bases 1 to 1621)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003070).
            
            On Sep 12, 2016 this sequence version replaced NM_106458.3.
FEATURES             Location/Qualifiers
     source          1..1621
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     gene            1..1621
                     /gene="TPPB"
                     /locus_tag="AT1G78090"
                     /gene_synonym="Arabidopsis thaliana trehalose-6-phosphate
                     phosphatase B; ATTPPB; T11I11.2; T11I11_2;
                     trehalose-6-phosphate phosphatase; TREHALOSE-6-PHOSPHATE
                     PHOSPHATASE; trehalose-6-phosphate phosphatase B"
                     /note="homologous to the C-terminal part of microbial
                     trehalose-6-phosphate phosphatases"
                     /db_xref="Araport:AT1G78090"
                     /db_xref="GeneID:844144"
                     /db_xref="TAIR:AT1G78090"
     CDS             153..1277
                     /gene="TPPB"
                     /locus_tag="AT1G78090"
                     /gene_synonym="Arabidopsis thaliana trehalose-6-phosphate
                     phosphatase B; ATTPPB; T11I11.2; T11I11_2;
                     trehalose-6-phosphate phosphatase; TREHALOSE-6-PHOSPHATE
                     PHOSPHATASE; trehalose-6-phosphate phosphatase B"
                     /inference="Similar to RNA sequence,
                     EST:INSD:ES155925.1,INSD:AV554546.1,INSD:ES193174.1,
                     INSD:ES164146.1,INSD:AU227423.1,INSD:AV545690.1,
                     INSD:ES146689.1,INSD:ES177835.1,INSD:AU236489.1,
                     INSD:EL110267.1,INSD:AA597976.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AF007779.1,INSD:BT004348.1,INSD:BT002801.1"
                     /note="trehalose-6-phosphate phosphatase (TPPB); CONTAINS
                     InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily
                     IIB (InterPro:IPR006379), Trehalose-phosphatase
                     (InterPro:IPR003337); BEST Arabidopsis thaliana protein
                     match is: Haloacid dehalogenase-like hydrolase (HAD)
                     superfamily protein (TAIR:AT1G22210.1); Has 2381 Blast
                     hits to 2375 proteins in 857 species: Archae - 41;
                     Bacteria - 1374; Metazoa - 220; Fungi - 153; Plants - 455;
                     Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink)."
                     /codon_start=1
                     /product="trehalose-6-phosphate phosphatase"
                     /protein_id="NP_177932.1"
                     /db_xref="Araport:AT1G78090"
                     /db_xref="GeneID:844144"
                     /db_xref="TAIR:AT1G78090"
                     /translation="MTNQNVIVSDRKPILGLKTITVSVSNSPLFSNSFPTYFNFPRRK
                     LLKLLEAADKNNLVVAPKITSMIDSMRDSSPTRLRSSSYDSVSDNDDKTSWIVRFPSA
                     LNMFDEIVNAAKGKQIVMFLDYDGTLSPIVEDPDKAFITHEMREVVKDVASNFPTAIV
                     TGRSIEKVRSFVQVNEIYYAGSHGMDIEGPTNENSNGQSNERVLFQPAREFLPMIEKV
                     VNILEEKTKWIPGAMVENNKFCLSVHFRRVDEKRWPALAEVVKSVLIDYPKLKLTQGR
                     KVLEIRPTIKWDKGQALNFLLKSLGYENSDDVVPVYIGDDRTDEDAFKVLRERGQGFG
                     ILVSKVPKDTNASYSLQDPSQVNKFLERLVEWKRKTVGEE"
ORIGIN      
        1 ccaatgatag atgaagtttt ttcctatttc ttttgtcttc tcttccttct tcttataaat
       61 tcctctactc ctccttcacc atttcctcct cctcaccttc tctctctcaa catctctctc
      121 tttctctgtc ttctctctgt ctcaacgaga atatgactaa ccagaatgtc atcgtttccg
      181 acaggaaacc catcttgggt ttgaaaacca tcactgtctc tgtctctaac tctcctctgt
      241 tctctaattc ctttcccact tactttaact tccctcgtcg aaagctcttg aaacttcttg
      301 aagcagccga caaaaacaac ttagttgttg ctccaaagat tacgtctatg atcgattcca
      361 tgcgtgattc ttcccctaca cgtctcagat cctcttccta tgactctgtt tcagataacg
      421 acgacaaaac atcttggatc gttcgttttc cttcggcttt aaatatgttt gatgagattg
      481 tgaatgctgc gaaagggaaa cagattgtca tgtttcttga ttacgacgga actctttctc
      541 ccatagttga agatcccgac aaagctttca taacccatga gatgagagaa gtcgtaaaag
      601 acgtggcttc gaatttcccg actgctattg tcaccgggag atccattgag aaggttcgta
      661 gttttgtcca agtaaacgag atttactacg ccggaagcca cggcatggac attgaaggtc
      721 cgaccaacga aaatagtaac ggccagagta atgaaagagt gctattccaa cctgctcgtg
      781 aatttttacc gatgatcgag aaggtggtta atattttaga ggaaaaaaca aaatggatcc
      841 ctggggctat ggtggagaac aacaagtttt gtctgtccgt acattttcga cgtgttgatg
      901 agaagagatg gcctgcatta gctgaagtag taaaatcagt tcttattgat tatccaaagc
      961 tgaaactaac ccaaggtaga aaggtacttg aaatccgccc cacaatcaaa tgggacaagg
     1021 gccaggcact caatttttta ctaaaatcat taggatatga aaattcggat gatgttgtgc
     1081 cggtgtatat cggggatgac cgtactgacg aagatgcgtt taaggtttta cgtgaaaggg
     1141 gacaaggttt tgggattctt gtctcaaaag taccaaagga caccaatgcc tcttattctc
     1201 ttcaagaccc ttctcaggtt aacaagtttc tggaacgttt agtagaatgg aagaggaaga
     1261 cagtgggaga agagtgaaag acatgcaaca taattacaca aataacacct gagttttgag
     1321 tagattatta atttatataa acaccctttt taaattagta gatgcctgga gggtgtttcg
     1381 gccagaagtt tttcttttaa tctacatcga accgaaaatt gtaaatttcg tgtaacgatt
     1441 tagaaatgga aaaatatatt aataatttac tcattcttat ttgacctttc ctttgttcac
     1501 tttcttgttg tacatttttt ctttctttta taactttcat ggtttaatta ctgaatatgg
     1561 gatgattttt ttgatactgg aaaagtttta aaatgtactg ttgtaaacga ataaatcaaa
     1621 c
//
Feature
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