LOCUS NM_106458 1621 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana trehalose-6-phosphate phosphatase (TPPB),
mRNA.
ACCESSION NM_106458
VERSION NM_106458.4
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1621)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (bases 1 to 1621)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1621)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1621)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (bases 1 to 1621)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003070).
On Sep 12, 2016 this sequence version replaced NM_106458.3.
FEATURES Location/Qualifiers
source 1..1621
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
gene 1..1621
/gene="TPPB"
/locus_tag="AT1G78090"
/gene_synonym="Arabidopsis thaliana trehalose-6-phosphate
phosphatase B; ATTPPB; T11I11.2; T11I11_2;
trehalose-6-phosphate phosphatase; TREHALOSE-6-PHOSPHATE
PHOSPHATASE; trehalose-6-phosphate phosphatase B"
/note="homologous to the C-terminal part of microbial
trehalose-6-phosphate phosphatases"
/db_xref="Araport:AT1G78090"
/db_xref="GeneID:844144"
/db_xref="TAIR:AT1G78090"
CDS 153..1277
/gene="TPPB"
/locus_tag="AT1G78090"
/gene_synonym="Arabidopsis thaliana trehalose-6-phosphate
phosphatase B; ATTPPB; T11I11.2; T11I11_2;
trehalose-6-phosphate phosphatase; TREHALOSE-6-PHOSPHATE
PHOSPHATASE; trehalose-6-phosphate phosphatase B"
/inference="Similar to RNA sequence,
EST:INSD:ES155925.1,INSD:AV554546.1,INSD:ES193174.1,
INSD:ES164146.1,INSD:AU227423.1,INSD:AV545690.1,
INSD:ES146689.1,INSD:ES177835.1,INSD:AU236489.1,
INSD:EL110267.1,INSD:AA597976.1"
/inference="similar to RNA sequence,
mRNA:INSD:AF007779.1,INSD:BT004348.1,INSD:BT002801.1"
/note="trehalose-6-phosphate phosphatase (TPPB); CONTAINS
InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily
IIB (InterPro:IPR006379), Trehalose-phosphatase
(InterPro:IPR003337); BEST Arabidopsis thaliana protein
match is: Haloacid dehalogenase-like hydrolase (HAD)
superfamily protein (TAIR:AT1G22210.1); Has 2381 Blast
hits to 2375 proteins in 857 species: Archae - 41;
Bacteria - 1374; Metazoa - 220; Fungi - 153; Plants - 455;
Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink)."
/codon_start=1
/product="trehalose-6-phosphate phosphatase"
/protein_id="NP_177932.1"
/db_xref="Araport:AT1G78090"
/db_xref="GeneID:844144"
/db_xref="TAIR:AT1G78090"
/translation="MTNQNVIVSDRKPILGLKTITVSVSNSPLFSNSFPTYFNFPRRK
LLKLLEAADKNNLVVAPKITSMIDSMRDSSPTRLRSSSYDSVSDNDDKTSWIVRFPSA
LNMFDEIVNAAKGKQIVMFLDYDGTLSPIVEDPDKAFITHEMREVVKDVASNFPTAIV
TGRSIEKVRSFVQVNEIYYAGSHGMDIEGPTNENSNGQSNERVLFQPAREFLPMIEKV
VNILEEKTKWIPGAMVENNKFCLSVHFRRVDEKRWPALAEVVKSVLIDYPKLKLTQGR
KVLEIRPTIKWDKGQALNFLLKSLGYENSDDVVPVYIGDDRTDEDAFKVLRERGQGFG
ILVSKVPKDTNASYSLQDPSQVNKFLERLVEWKRKTVGEE"
ORIGIN
1 ccaatgatag atgaagtttt ttcctatttc ttttgtcttc tcttccttct tcttataaat
61 tcctctactc ctccttcacc atttcctcct cctcaccttc tctctctcaa catctctctc
121 tttctctgtc ttctctctgt ctcaacgaga atatgactaa ccagaatgtc atcgtttccg
181 acaggaaacc catcttgggt ttgaaaacca tcactgtctc tgtctctaac tctcctctgt
241 tctctaattc ctttcccact tactttaact tccctcgtcg aaagctcttg aaacttcttg
301 aagcagccga caaaaacaac ttagttgttg ctccaaagat tacgtctatg atcgattcca
361 tgcgtgattc ttcccctaca cgtctcagat cctcttccta tgactctgtt tcagataacg
421 acgacaaaac atcttggatc gttcgttttc cttcggcttt aaatatgttt gatgagattg
481 tgaatgctgc gaaagggaaa cagattgtca tgtttcttga ttacgacgga actctttctc
541 ccatagttga agatcccgac aaagctttca taacccatga gatgagagaa gtcgtaaaag
601 acgtggcttc gaatttcccg actgctattg tcaccgggag atccattgag aaggttcgta
661 gttttgtcca agtaaacgag atttactacg ccggaagcca cggcatggac attgaaggtc
721 cgaccaacga aaatagtaac ggccagagta atgaaagagt gctattccaa cctgctcgtg
781 aatttttacc gatgatcgag aaggtggtta atattttaga ggaaaaaaca aaatggatcc
841 ctggggctat ggtggagaac aacaagtttt gtctgtccgt acattttcga cgtgttgatg
901 agaagagatg gcctgcatta gctgaagtag taaaatcagt tcttattgat tatccaaagc
961 tgaaactaac ccaaggtaga aaggtacttg aaatccgccc cacaatcaaa tgggacaagg
1021 gccaggcact caatttttta ctaaaatcat taggatatga aaattcggat gatgttgtgc
1081 cggtgtatat cggggatgac cgtactgacg aagatgcgtt taaggtttta cgtgaaaggg
1141 gacaaggttt tgggattctt gtctcaaaag taccaaagga caccaatgcc tcttattctc
1201 ttcaagaccc ttctcaggtt aacaagtttc tggaacgttt agtagaatgg aagaggaaga
1261 cagtgggaga agagtgaaag acatgcaaca taattacaca aataacacct gagttttgag
1321 tagattatta atttatataa acaccctttt taaattagta gatgcctgga gggtgtttcg
1381 gccagaagtt tttcttttaa tctacatcga accgaaaatt gtaaatttcg tgtaacgatt
1441 tagaaatgga aaaatatatt aataatttac tcattcttat ttgacctttc ctttgttcac
1501 tttcttgttg tacatttttt ctttctttta taactttcat ggtttaatta ctgaatatgg
1561 gatgattttt ttgatactgg aaaagtttta aaatgtactg ttgtaaacga ataaatcaaa
1621 c
//