U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ZIM GATA-type zinc finger protein with TIFY domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828549, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ZIM
    Official Full Name
    GATA-type zinc finger protein with TIFY domain-containing protein
    Primary source
    TAIR:AT4G24470
    Locus tag
    AT4G24470
    See related
    Araport:AT4G24470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtTIFY1; GATA TRANSCRIPTION FACTOR 25; GATA25; T22A6.300; T22A6_300; TIFY1; Zinc-finger protein expressed in Inflorescence Meristem
    Summary
    ZIM is a putative transcription factor containing an atypical GATA-type zinc-finger motif.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ZIM in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (12645542..12647985)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene phosphoglucan, water dikinase Neighboring gene CRT (chloroquine-resistance transporter)-like transporter 2 Neighboring gene Protein kinase superfamily protein Neighboring gene RAB geranylgeranyl transferase alpha subunit 1 Neighboring gene hydroxyproline-rich glycoprotein family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Characterization of Arabidopsis ZIM, a member of a novel plant-specific GATA factor gene family. Shikata M, et al. J Exp Bot, 2004 Mar. PMID 14966217
    2. Characterization of a novel gene encoding a putative single zinc-finger protein, ZIM, expressed during the reproductive phase in Arabidopsis thaliana. Nishii A, et al. Biosci Biotechnol Biochem, 2000 Jul. PMID 10945256
    3. Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family. Manfield IW, et al. Plant Physiol, 2007 Feb. PMID 17208962, Free PMC Article
    4. A stele-enriched gene regulatory network in the Arabidopsis root. Brady SM, et al. Mol Syst Biol, 2011 Jan 18. PMID 21245844, Free PMC Article
    5. Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors. Sparks EE, et al. Dev Cell, 2016 Dec 5. PMID 27923776, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001203892.1
    NM_118580.4
    NM_179104.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within circadian rhythm IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    GATA-type zinc finger protein with TIFY domain-containing protein
    NP_001190821.1
    • TIFY1; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Tify (InterPro:IPR010399), CCT domain (InterPro:IPR010402), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: ZIM-LIKE 2 (TAIR:AT1G51600.2).
    NP_194178.1
    • TIFY1; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Tify (InterPro:IPR010399), CCT domain (InterPro:IPR010402), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: ZIM-LIKE 2 (TAIR:AT1G51600.2); Has 1524 Blast hits to 1503 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 686; Plants - 776; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
    NP_849435.1
    • Zinc-finger protein expressed in Inflorescence Meristem (ZIM); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Tify (InterPro:IPR010399), CCT domain (InterPro:IPR010402), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: ZIM-LIKE 2 (TAIR:AT1G51600.2); Has 1524 Blast hits to 1503 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 686; Plants - 776; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12645542..12647985
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179104.3 → NP_849435.1  GATA-type zinc finger protein with TIFY domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849435.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WNU9, Q9LRH6, Q9STU8
      UniProtKB/TrEMBL
      A0A178V1K9
      Conserved Domains (4) summary
      smart00979
      Location:77 → 112
      TIFY; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs
      smart00401
      Location:209 → 261
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      cd00202
      Location:213 → 259
      ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
      pfam06203
      Location:146 → 189
      CCT; CCT motif

    2. NM_118580.4 → NP_194178.1  GATA-type zinc finger protein with TIFY domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194178.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WNU9, Q9LRH6, Q9STU8
      UniProtKB/TrEMBL
      A0A178V1K9
      Conserved Domains (4) summary
      smart00979
      Location:77 → 112
      TIFY; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs
      smart00401
      Location:209 → 261
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      cd00202
      Location:213 → 259
      ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
      pfam06203
      Location:146 → 189
      CCT; CCT motif

    3. NM_001203892.1 → NP_001190821.1  GATA-type zinc finger protein with TIFY domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190821.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V1K9, A0A5S9XVG4, F4JQX4
      Conserved Domains (3) summary
      smart00979
      Location:77 → 112
      TIFY; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs
      smart00401
      Location:209 → 261
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      pfam06203
      Location:146 → 189
      CCT; CCT motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LRH6.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools