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Conserved domains on  [gi|15233844|ref|NP_194178|]
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GATA-type zinc finger protein with TIFY domain-containing protein [Arabidopsis thaliana]

Protein Classification

GATA-type transcription factor( domain architecture ID 12223763)

GATA-type transcription factor binds to the DNA consensus sequence [AT]GATA[AG] and may function as a transcription factor/regulator

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
209-261 1.94e-17

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


:

Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 74.76  E-value: 1.94e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 15233844    209 HPEISCTHCGisSKCTPMMRRGPSGPRTLCNACGLFWANRGTL-RDLSKKTEEN 261
Cdd:smart00401   1 GSGRSCSNCG--TTETPLWRRGPSGNKTLCNACGLYYKKHGGLkRPLSLKKDGI 52
CCT pfam06203
CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino ...
 146-189 1.06e-16

CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localization signal within the second half of the CCT motif. Toc1 mutants have been identified in this region.


:

Pssm-ID: 461849  Cd Length: 44  Bit Score: 72.53  E-value: 1.06e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 15233844   146 RAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSK 189
Cdd:pfam06203   1 REEALLRYREKRKTRKFDKKIRYESRKALADKRPRVKGRFVKAD 44
TIFY smart00979
This short possible domain is found in a variety of plant transcription factors that contain ...
 77-112 4.99e-12

This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs; Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response.


:

Pssm-ID: 198047  Cd Length: 36  Bit Score: 59.58  E-value: 4.99e-12
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 15233844     77 PPEGANQLTISFRGQVYVFDAVGADKVDAVLSLLGG 112
Cdd:smart00979   1 PPEGSQQLTIFYGGSVCVFDDVPPEKAQEIMSLAGN 36
 
Name Accession Description Interval E-value
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
209-261 1.94e-17

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 74.76  E-value: 1.94e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 15233844    209 HPEISCTHCGisSKCTPMMRRGPSGPRTLCNACGLFWANRGTL-RDLSKKTEEN 261
Cdd:smart00401   1 GSGRSCSNCG--TTETPLWRRGPSGNKTLCNACGLYYKKHGGLkRPLSLKKDGI 52
CCT pfam06203
CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino ...
 146-189 1.06e-16

CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localization signal within the second half of the CCT motif. Toc1 mutants have been identified in this region.


Pssm-ID: 461849  Cd Length: 44  Bit Score: 72.53  E-value: 1.06e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 15233844   146 RAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSK 189
Cdd:pfam06203   1 REEALLRYREKRKTRKFDKKIRYESRKALADKRPRVKGRFVKAD 44
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 213-259 9.88e-16

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 70.09  E-value: 9.88e-16
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 15233844 213 SCTHCGisSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSKKTE 259
Cdd:cd00202   1 ACSNCG--TTTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKRKK 45
GATA pfam00320
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ...
 214-251 1.73e-13

GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.


Pssm-ID: 425605 [Multi-domain]  Cd Length: 36  Bit Score: 63.49  E-value: 1.73e-13
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 15233844   214 CTHCGISSkcTPMMRRGPSGPRTLCNACGLFWANRGTL 251
Cdd:pfam00320   1 CSNCGTTK--TPLWRRGPNGNRTLCNACGLYYKKKGLK 36
TIFY smart00979
This short possible domain is found in a variety of plant transcription factors that contain ...
 77-112 4.99e-12

This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs; Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response.


Pssm-ID: 198047  Cd Length: 36  Bit Score: 59.58  E-value: 4.99e-12
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 15233844     77 PPEGANQLTISFRGQVYVFDAVGADKVDAVLSLLGG 112
Cdd:smart00979   1 PPEGSQQLTIFYGGSVCVFDDVPPEKAQEIMSLAGN 36
tify pfam06200
tify domain; This short possible domain is found in a variety of plant transcription factors ...
 79-111 3.94e-10

tify domain; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs. Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response.


Pssm-ID: 461847  Cd Length: 33  Bit Score: 53.92  E-value: 3.94e-10
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15233844    79 EGANQLTISFRGQVYVFDAVGADKVDAVLSLLG 111
Cdd:pfam06200   1 PASAQLTIFYGGKVCVFDDVPAEKAQAIMLLAG 33
 
Name Accession Description Interval E-value
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
209-261 1.94e-17

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 74.76  E-value: 1.94e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 15233844    209 HPEISCTHCGisSKCTPMMRRGPSGPRTLCNACGLFWANRGTL-RDLSKKTEEN 261
Cdd:smart00401   1 GSGRSCSNCG--TTETPLWRRGPSGNKTLCNACGLYYKKHGGLkRPLSLKKDGI 52
CCT pfam06203
CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino ...
 146-189 1.06e-16

CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localization signal within the second half of the CCT motif. Toc1 mutants have been identified in this region.


Pssm-ID: 461849  Cd Length: 44  Bit Score: 72.53  E-value: 1.06e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 15233844   146 RAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSK 189
Cdd:pfam06203   1 REEALLRYREKRKTRKFDKKIRYESRKALADKRPRVKGRFVKAD 44
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 213-259 9.88e-16

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 70.09  E-value: 9.88e-16
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 15233844 213 SCTHCGisSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSKKTE 259
Cdd:cd00202   1 ACSNCG--TTTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKRKK 45
GATA pfam00320
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ...
 214-251 1.73e-13

GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.


Pssm-ID: 425605 [Multi-domain]  Cd Length: 36  Bit Score: 63.49  E-value: 1.73e-13
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 15233844   214 CTHCGISSkcTPMMRRGPSGPRTLCNACGLFWANRGTL 251
Cdd:pfam00320   1 CSNCGTTK--TPLWRRGPNGNRTLCNACGLYYKKKGLK 36
TIFY smart00979
This short possible domain is found in a variety of plant transcription factors that contain ...
 77-112 4.99e-12

This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs; Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response.


Pssm-ID: 198047  Cd Length: 36  Bit Score: 59.58  E-value: 4.99e-12
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 15233844     77 PPEGANQLTISFRGQVYVFDAVGADKVDAVLSLLGG 112
Cdd:smart00979   1 PPEGSQQLTIFYGGSVCVFDDVPPEKAQEIMSLAGN 36
tify pfam06200
tify domain; This short possible domain is found in a variety of plant transcription factors ...
 79-111 3.94e-10

tify domain; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs. Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response.


Pssm-ID: 461847  Cd Length: 33  Bit Score: 53.92  E-value: 3.94e-10
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15233844    79 EGANQLTISFRGQVYVFDAVGADKVDAVLSLLG 111
Cdd:pfam06200   1 PASAQLTIFYGGKVCVFDDVPAEKAQAIMLLAG 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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