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    ZFN3 zinc finger nuclease 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831516, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ZFN3
    Official Full Name
    zinc finger nuclease 3
    Primary source
    TAIR:AT5G16540
    Locus tag
    AT5G16540
    See related
    Araport:AT5G16540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MQK4.29; MQK4_29; zinc finger nuclease 3
    Summary
    Encodes a zinc finger protein.
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    Genomic context

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    See ZFN3 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (5403069..5405173)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Alpha-1,4-glucan-protein synthase family protein Neighboring gene uncharacterized protein Neighboring gene Auxin efflux carrier family protein Neighboring gene voltage-dependent L-type calcium channel subunit Neighboring gene Homeodomain-like superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Targeted mutagenesis using zinc-finger nucleases in Arabidopsis. Lloyd A, et al. Proc Natl Acad Sci U S A, 2005 Feb 8. PMID 15677315, Free PMC Article
    2. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_121660.4
    NM_180710.3
    NM_203061.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables nuclease activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger nuclease 3
    NP_568332.2
    • zinc finger nuclease 3 (ZFN3); CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger protein 1 (TAIR:AT3G02830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_851041.1
    • zinc finger nuclease 3 (ZFN3); CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger protein 1 (TAIR:AT3G02830.1); Has 1367 Blast hits to 672 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 181; Fungi - 162; Plants - 933; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
    NP_974790.1
    • zinc finger nuclease 3 (ZFN3); CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger protein 1 (TAIR:AT3G02830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5403069..5405173
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343455.1 → NP_001330309.1  zinc finger nuclease 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BAG3

    2. NM_203061.2 → NP_974790.1  zinc finger nuclease 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974790.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178USP3
      Conserved Domains (1) summary
      pfam00642
      Location:68 → 93
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

    3. NM_180710.3 → NP_851041.1  zinc finger nuclease 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851041.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q27GJ0, Q8L7N8, Q8LFU7, Q9XFB9
      UniProtKB/TrEMBL
      A0A5S9Y500
      Conserved Domains (1) summary
      pfam00642
      Location:89 → 114
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

    4. NM_121660.4 → NP_568332.2  zinc finger nuclease 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568332.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y500
      Conserved Domains (1) summary
      pfam00642
      Location:89 → 114
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L7N8.2

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