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Conserved domains on  [gi|22326848|ref|NP_568332|]
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zinc finger nuclease 3 [Arabidopsis thaliana]

Protein Classification

zinc finger CCCH domain-containing protein( domain architecture ID 10457906)

zinc finger CCCH domain-containing protein similar to Homo sapiens proline-rich protein 3 (PRR3)

CATH:  4.10.1000.10
Gene Ontology:  GO:0046872|GO:0003676
PubMed:  12665246|27990022
SCOP:  3001741

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
89-114 5.28e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 45.26  E-value: 5.28e-07
                          10        20
                  ....*....|....*....|....*.
gi 22326848    89 GQPECEFYLKTGTCKFGVTCKFHHPR 114
Cdd:pfam00642   2 KTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
244-270 2.74e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 43.34  E-value: 2.74e-06
                          10        20
                  ....*....|....*....|....*..
gi 22326848   244 PGQPECQFYMKTGDCKFGTVCKFHHPR 270
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
134-160 4.88e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 42.57  E-value: 4.88e-06
                          10        20
                  ....*....|....*....|....*..
gi 22326848   134 PNEDDCSYFLRIGQCKFGGTCKFNHPQ 160
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
284-309 5.17e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 42.57  E-value: 5.17e-06
                          10        20
                  ....*....|....*....|....*.
gi 22326848   284 GEPLCVFYSRYGICKFGPSCKFDHPM 309
Cdd:pfam00642   2 KTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
44-68 9.88e-05

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 39.10  E-value: 9.88e-05
                          10        20
                  ....*....|....*....|....*
gi 22326848    44 GEPDCAYYIRTGLCRFGSTCRFNHP 68
Cdd:pfam00642   2 KTELCRFFLRTGYCKYGDRCKFAHG 26
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
89-114 5.28e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 45.26  E-value: 5.28e-07
                          10        20
                  ....*....|....*....|....*.
gi 22326848    89 GQPECEFYLKTGTCKFGVTCKFHHPR 114
Cdd:pfam00642   2 KTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
244-270 2.74e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 43.34  E-value: 2.74e-06
                          10        20
                  ....*....|....*....|....*..
gi 22326848   244 PGQPECQFYMKTGDCKFGTVCKFHHPR 270
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
134-160 4.88e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 42.57  E-value: 4.88e-06
                          10        20
                  ....*....|....*....|....*..
gi 22326848   134 PNEDDCSYFLRIGQCKFGGTCKFNHPQ 160
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
284-309 5.17e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 42.57  E-value: 5.17e-06
                          10        20
                  ....*....|....*....|....*.
gi 22326848   284 GEPLCVFYSRYGICKFGPSCKFDHPM 309
Cdd:pfam00642   2 KTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
44-68 9.88e-05

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 39.10  E-value: 9.88e-05
                          10        20
                  ....*....|....*....|....*
gi 22326848    44 GEPDCAYYIRTGLCRFGSTCRFNHP 68
Cdd:pfam00642   2 KTELCRFFLRTGYCKYGDRCKFAHG 26
ZnF_C3H1 smart00356
zinc finger;
282-309 1.94e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 35.30  E-value: 1.94e-03
                           10        20
                   ....*....|....*....|....*...
gi 22326848    282 SSGEPLCVFYsRYGICKFGPSCKFDHPM 309
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHPL 27
ZnF_C3H1 smart00356
zinc finger;
243-270 9.08e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 33.37  E-value: 9.08e-03
                           10        20
                   ....*....|....*....|....*...
gi 22326848    243 RPGQPECQFYmKTGDCKFGTVCKFHHPR 270
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHPL 27
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
89-114 5.28e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 45.26  E-value: 5.28e-07
                          10        20
                  ....*....|....*....|....*.
gi 22326848    89 GQPECEFYLKTGTCKFGVTCKFHHPR 114
Cdd:pfam00642   2 KTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
244-270 2.74e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 43.34  E-value: 2.74e-06
                          10        20
                  ....*....|....*....|....*..
gi 22326848   244 PGQPECQFYMKTGDCKFGTVCKFHHPR 270
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
134-160 4.88e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 42.57  E-value: 4.88e-06
                          10        20
                  ....*....|....*....|....*..
gi 22326848   134 PNEDDCSYFLRIGQCKFGGTCKFNHPQ 160
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
284-309 5.17e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 42.57  E-value: 5.17e-06
                          10        20
                  ....*....|....*....|....*.
gi 22326848   284 GEPLCVFYSRYGICKFGPSCKFDHPM 309
Cdd:pfam00642   2 KTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
44-68 9.88e-05

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 39.10  E-value: 9.88e-05
                          10        20
                  ....*....|....*....|....*
gi 22326848    44 GEPDCAYYIRTGLCRFGSTCRFNHP 68
Cdd:pfam00642   2 KTELCRFFLRTGYCKYGDRCKFAHG 26
ZnF_C3H1 smart00356
zinc finger;
282-309 1.94e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 35.30  E-value: 1.94e-03
                           10        20
                   ....*....|....*....|....*...
gi 22326848    282 SSGEPLCVFYsRYGICKFGPSCKFDHPM 309
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHPL 27
ZnF_C3H1 smart00356
zinc finger;
243-270 9.08e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 33.37  E-value: 9.08e-03
                           10        20
                   ....*....|....*....|....*...
gi 22326848    243 RPGQPECQFYmKTGDCKFGTVCKFHHPR 270
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHPL 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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