U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    fam3a FAM3 metabolism regulating signaling molecule A [ Danio rerio (zebrafish) ]

    Gene ID: 393773, updated on 9-Dec-2024

    Summary

    Official Symbol
    fam3aprovided by ZNC
    Official Full Name
    FAM3 metabolism regulating signaling molecule Aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1772
    See related
    Ensembl:ENSDARG00000070675 AllianceGenome:ZFIN:ZDB-GENE-040426-1772
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:73350
    Summary
    Predicted to enable carbohydrate binding activity. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human FAM3A (FAM3 metabolism regulating signaling molecule A). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See fam3a in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (25135922..25150288)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (25209381..25223747)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103909690 Neighboring gene isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma Neighboring gene WNK lysine deficient protein kinase 3 Neighboring gene erb-b2 receptor tyrosine kinase 3b

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Clone Names

    • MGC73350

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    protein FAM3A
    Names
    family with sequence similarity 3 member A

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200800.1NP_957094.1  protein FAM3A precursor

      See identical proteins and their annotated locations for NP_957094.1

      Status: PROVISIONAL

      Source sequence(s)
      BC059665
      UniProtKB/TrEMBL
      A0A8M1PDG2, Q6PBL5
      Related
      ENSDARP00000094761.3, ENSDART00000103986.4
      Conserved Domains (1) summary
      cd13940
      Location:53222
      ILEI_FAM3C; Interleukin-like EMT inducer

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      25135922..25150288
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395152.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      37131..51481
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)