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    • Showing Current items.

    spig-9 Minor capsid protein [ Caenorhabditis elegans ]

    Gene ID: 179846, updated on 9-Dec-2024

    Summary

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    Official Symbol
    spig-9
    Official Full Name
    Minor capsid protein
    Primary source
    WormBase:WBGene00009995
    Locus tag
    CELE_F53F4.13
    See related
    AllianceGenome:WB:WBGene00009995
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in amphid sheath cell and phasmid sheath cell. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See spig-9 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    3
    Sequence:
    Chromosome: V; NC_003283.11 (13611337..13611882, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Flavin-containing monooxygenase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Nucleotide-diphospho-sugar transferase domain-containing protein Neighboring gene pseudo Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. C. elegans feed yolk to their young in a form of primitive lactation. Kern CC, et al. Nat Commun, 2021 Oct 5. PMID 34611154, Free PMC Article
    2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    3. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    Minor capsid protein
    NP_506371.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      13611337..13611882 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_073970.7 → NP_506371.1  Minor capsid protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_506371.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q20724
      Conserved Domains (1) summary
      pfam14747
      Location:24 → 95
      DUF4473; Domain of unknown function (DUF4473)
    Nucleotide Protein
    Heading Accession and Version

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