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Conserved domains on  [gi|17561334|ref|NP_506371|]
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Minor capsid protein [Caenorhabditis elegans]

Protein Classification

DUF4473 domain-containing protein( domain architecture ID 10631710)

DUF4473 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4473 pfam14747
Domain of unknown function (DUF4473); This short family is largely confined to Caenorhabditis ...
 26-95 1.57e-14

Domain of unknown function (DUF4473); This short family is largely confined to Caenorhabditis proteins. The function is not known. There are two well-conserved aspartate residues.


:

Pssm-ID: 373266  Cd Length: 78  Bit Score: 63.01  E-value: 1.57e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17561334    26 NYLQELLDAGISQETANKLVDITASHNND---GEISEKSGKTIFQEIISETDAAIKQAPANDQQAYKAFVESK 95
Cdd:pfam14747   6 EAKAELVAAGMSEKAADGLVKIAEKFKSEfpkAKGDKEAAKKAFEKYKAETDAFIKTQSEEDQTAYKAFVEKK 78
 
Name Accession Description Interval E-value
DUF4473 pfam14747
Domain of unknown function (DUF4473); This short family is largely confined to Caenorhabditis ...
 26-95 1.57e-14

Domain of unknown function (DUF4473); This short family is largely confined to Caenorhabditis proteins. The function is not known. There are two well-conserved aspartate residues.


Pssm-ID: 373266  Cd Length: 78  Bit Score: 63.01  E-value: 1.57e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17561334    26 NYLQELLDAGISQETANKLVDITASHNND---GEISEKSGKTIFQEIISETDAAIKQAPANDQQAYKAFVESK 95
Cdd:pfam14747   6 EAKAELVAAGMSEKAADGLVKIAEKFKSEfpkAKGDKEAAKKAFEKYKAETDAFIKTQSEEDQTAYKAFVEKK 78
 
Name Accession Description Interval E-value
DUF4473 pfam14747
Domain of unknown function (DUF4473); This short family is largely confined to Caenorhabditis ...
 26-95 1.57e-14

Domain of unknown function (DUF4473); This short family is largely confined to Caenorhabditis proteins. The function is not known. There are two well-conserved aspartate residues.


Pssm-ID: 373266  Cd Length: 78  Bit Score: 63.01  E-value: 1.57e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17561334    26 NYLQELLDAGISQETANKLVDITASHNND---GEISEKSGKTIFQEIISETDAAIKQAPANDQQAYKAFVESK 95
Cdd:pfam14747   6 EAKAELVAAGMSEKAADGLVKIAEKFKSEfpkAKGDKEAAKKAFEKYKAETDAFIKTQSEEDQTAYKAFVEKK 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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