U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829418, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT4G32820
    Locus tag
    AT4G32820
    See related
    Araport:AT4G32820
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CABIN1; Calcineurin Binding protein 1; T16I18.30; T16I18_30
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    20
    Sequence:
    Chromosome: 4; NC_003075.7 (15831163..15841656, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene carotenoid cleavage dioxygenase 8 Neighboring gene ataurora1 Neighboring gene phosphofructokinase 6 Neighboring gene nuclear poly(a) polymerase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001160810.2
    NM_001342178.1
    NM_119435.7

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_001154282.2
    • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); Has 168 Blast hits to 155 proteins in 63 species: Archae - 8; Bacteria - 15; Metazoa - 66; Fungi - 5; Plants - 51; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
    NP_195008.6
    • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); Has 166 Blast hits to 153 proteins in 63 species: Archae - 8; Bacteria - 13; Metazoa - 66; Fungi - 5; Plants - 51; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15831163..15841656 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119435.7 → NP_195008.6  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195008.6

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JV59, Q9M078
      UniProtKB/TrEMBL
      A0A178UZ00, A0A5S9XY20, A0A654FV02
      Conserved Domains (2) summary
      sd00006
      Location:83 → 111
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:37 → 115
      TPR_12; Tetratricopeptide repeat

    2. NM_001342178.1 → NP_001328748.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UXL7, A0A1P8B5K4

    3. NM_001160810.2 → NP_001154282.2  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154282.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZ00, A0A5S9XY20, F4JV60
      Conserved Domains (3) summary
      sd00006
      Location:83 → 111
      TPR; TPR repeat [structural motif]
      pfam13414
      Location:82 → 148
      TPR_11; TPR repeat
      pfam13424
      Location:37 → 113
      TPR_12; Tetratricopeptide repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JV59.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.