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    NSH3 inosine-uridine preferring nucleoside hydrolase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832004, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NSH3
    Official Full Name
    inosine-uridine preferring nucleoside hydrolase family protein
    Primary source
    TAIR:AT5G18860
    Locus tag
    AT5G18860
    See related
    Araport:AT5G18860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17K4.110; F17K4_110; nucleoside hydrolase 3
    Summary
    Encodes a purine nucleoside hydrolase active in the apoplast. It might play a role in salvaging extracellular ATP. NSH3 transcript levels rise in response to jasmonic acid and wounding.
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    Genomic context

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    See NSH3 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (6290358..6295815)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene squamosa promoter binding protein-like 7 Neighboring gene Major facilitator superfamily protein Neighboring gene Low-density receptor-like protein Neighboring gene Inosine-uridine preferring nucleoside hydrolase family protein Neighboring gene RNA-directed DNA polymerase (reverse transcriptase)-related family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A proteomic approach to apoplastic proteins involved in cell wall regeneration in protoplasts of Arabidopsis suspension-cultured cells. Kwon HK, et al. Plant Cell Physiol, 2005 Jun. PMID 15769804
    2. Arabidopsis nucleoside hydrolases involved in intracellular and extracellular degradation of purines. Jung B, et al. Plant J, 2011 Mar. PMID 21235647
    3. Proteomics of loosely bound cell wall proteins of Arabidopsis thaliana cell suspension cultures: a critical analysis. Borderies G, et al. Electrophoresis, 2003 Oct. PMID 14595688
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001343573.1
    NM_121891.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables adenosine nucleosidase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables inosine nucleosidase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within adenosine catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within inosine catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to jasmonic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall HDA PubMed 

    General protein information

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    Preferred Names
    inosine-uridine preferring nucleoside hydrolase family protein
    NP_197387.1
    • inosine-uridine preferring nucleoside hydrolase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: Inosine-uridine preferring nucleoside hydrolase family protein (TAIR:AT5G18890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6290358..6295815
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121891.4 → NP_197387.1  inosine-uridine preferring nucleoside hydrolase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197387.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RY23
      UniProtKB/TrEMBL
      A0A654G2H6
      Conserved Domains (1) summary
      cd02647
      Location:46 → 396
      nuc_hydro_TvIAG; nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. ...

    2. NM_001343573.1 → NP_001330199.1  inosine-uridine preferring nucleoside hydrolase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RY23
      UniProtKB/TrEMBL
      A0A654G2H6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RY23.1

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