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    DEA(D/H)-box RNA helicase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829474, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DEA(D/H)-box RNA helicase family protein
    Primary source
    TAIR:AT4G33370
    Locus tag
    AT4G33370
    See related
    Araport:AT4G33370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17M5.130; F17M5_130
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (16069669..16071405, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Tic22-like family protein Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene dimethylallyl, adenosine tRNA methylthiotransferase Neighboring gene WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DEA(D/H)-box RNA helicase family protein
    NP_195063.1
    • DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, zinc ion binding, ATP-dependent helicase activity, ATP binding, nucleic acid binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), Zinc finger, CCHC-type (InterPro:IPR001878), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD-box protein abstrakt, putative (TAIR:AT5G51280.1); Has 45034 Blast hits to 44312 proteins in 3130 species: Archae - 817; Bacteria - 23057; Metazoa - 6215; Fungi - 4847; Plants - 2647; Viruses - 8; Other Eukaryotes - 7443 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16069669..16071405 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119491.1 → NP_195063.1  DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195063.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SZB4
      UniProtKB/TrEMBL
      A0A5S9XYN4
      Conserved Domains (3) summary
      PTZ00424
      Location:72 → 452
      PTZ00424; helicase 45; Provisional
      cd00268
      Location:99 → 313
      DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
      pfam00271
      Location:334 → 443
      Helicase_C; Helicase conserved C-terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SZB4.1

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