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    AFF1 ALF transcription elongation factor 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 700733, updated on 17-Aug-2024

    Summary

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    Official Symbol
    AFF1provided by VGNC
    Official Full Name
    ALF transcription elongation factor 1provided by VGNC
    Primary source
    VGNC:VGNC:69817
    See related
    Ensembl:ENSMMUG00000014076
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See AFF1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (85327993..85535131)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (85278864..85489679)

    Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene chromosome 5 C4orf36 homolog Neighboring gene 60S ribosomal protein L6 pseudogene Neighboring gene actin-related protein 2/3 complex subunit 1A-like Neighboring gene uracil-DNA glycosylase pseudogene Neighboring gene kelch like family member 8 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of super elongation complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AF4/FMR2 family member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041758.1 Reference Mmul_10 Primary Assembly

      Range
      85327993..85535131
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001095779.4 → XP_001095779.1  AF4/FMR2 family member 1 isoform X1

      UniProtKB/TrEMBL
      F7CE41, G7MTC7
      Related
      ENSMMUP00000018502.4, ENSMMUT00000019764.4
      Conserved Domains (1) summary
      pfam05110
      Location:16 → 1214
      AF-4; AF-4 proto-oncoprotein

    2. XM_028848601.1 → XP_028704434.1  AF4/FMR2 family member 1 isoform X4

      UniProtKB/TrEMBL
      A0A1D5QHI8, A0A1D5R6D0
      Related
      ENSMMUP00000047509.2, ENSMMUT00000075895.2
      Conserved Domains (1) summary
      pfam05110
      Location:16 → 1185
      AF-4; AF-4 proto-oncoprotein

    3. XM_015138760.2 → XP_014994246.1  AF4/FMR2 family member 1 isoform X2

      UniProtKB/TrEMBL
      G7MTC7
      Conserved Domains (1) summary
      pfam05110
      Location:16 → 1213
      AF-4; AF-4 proto-oncoprotein

    4. XM_028848602.1 → XP_028704435.1  AF4/FMR2 family member 1 isoform X5

      UniProtKB/TrEMBL
      A0A1D5R6D0
      Related
      ENSMMUP00000055868.2, ENSMMUT00000075221.2
      Conserved Domains (1) summary
      pfam05110
      Location:16 → 1184
      AF-4; AF-4 proto-oncoprotein

    5. XM_001095677.4 → XP_001095677.2  AF4/FMR2 family member 1 isoform X3

      UniProtKB/TrEMBL
      A0A1D5QFC5, G7MTC7
      Related
      ENSMMUP00000046745.2, ENSMMUT00000055715.2
      Conserved Domains (1) summary
      pfam05110
      Location:9 → 1207
      AF-4; AF-4 proto-oncoprotein

    6. XM_028848603.1 → XP_028704436.1  AF4/FMR2 family member 1 isoform X6

      Conserved Domains (1) summary
      pfam05110
      Location:2 → 860
      AF-4; AF-4 proto-oncoprotein

    7. XM_028848604.1 → XP_028704437.1  AF4/FMR2 family member 1 isoform X7

      Conserved Domains (1) summary
      pfam05110
      Location:1 → 844
      AF-4; AF-4 proto-oncoprotein
    Nucleotide Protein
    Heading Accession and Version

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