U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    AMMECR1 family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818453, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    AMMECR1 family
    Primary source
    TAIR:AT2G38710
    Locus tag
    AT2G38710
    See related
    Araport:AT2G38710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T6A23.9; T6A23_9
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (16184259..16187273, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Gag-Pol polyprotein/retrotransposon Neighboring gene mevalonate diphosphate decarboxylase 1 Neighboring gene microtubule-associated protein 65-5 Neighboring gene Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_001036432.2
    NM_001336722.1
    NM_001336723.1
    NM_129428.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    AMMECR1 family
    NP_001031509.1
    • AMMECR1 family; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMMECR1 (InterPro:IPR002733); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_565894.1
    • AMMECR1 family; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMMECR1 (InterPro:IPR002733); Has 1012 Blast hits to 1010 proteins in 455 species: Archae - 211; Bacteria - 342; Metazoa - 168; Fungi - 130; Plants - 53; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16184259..16187273 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129428.4 → NP_565894.1  AMMECR1 family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565894.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZVJ2
      UniProtKB/TrEMBL
      A0A178VZ36, A0A384LDX3, B9DGY7
      Conserved Domains (1) summary
      pfam01871
      Location:11 → 183
      AMMECR1

    2. NM_001336723.1 → NP_001325028.1  AMMECR1 family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZVJ2
      UniProtKB/TrEMBL
      A0A178VZ36, A0A384LDX3, B9DGY7
      Conserved Domains (1) summary
      pfam01871
      Location:11 → 183
      AMMECR1

    3. NM_001336722.1 → NP_001325027.1  AMMECR1 family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZVJ2
      UniProtKB/TrEMBL
      A0A178VZ36, A0A384LDX3, B9DGY7
      Conserved Domains (1) summary
      pfam01871
      Location:11 → 183
      AMMECR1

    4. NM_001036432.2 → NP_001031509.1  AMMECR1 family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031509.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZVJ2
      UniProtKB/TrEMBL
      A0A178VZ36, A0A384LDX3, B9DGY7
      Conserved Domains (1) summary
      pfam01871
      Location:11 → 183
      AMMECR1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZVJ2.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools