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    calcium-dependent lipid-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841226, updated on 18-Sep-2024

    Summary

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    Official Full Name
    calcium-dependent lipid-binding family protein
    Primary source
    TAIR:AT1G48090
    Locus tag
    AT1G48090
    See related
    Araport:AT1G48090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    66
    Sequence:
    Chromosome: 1; NC_003070.9 (17732010..17758508, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Thioredoxin superfamily protein Neighboring gene tRNA-Lys Neighboring gene nucleic acid-binding/zinc ion-binding protein Neighboring gene miscRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Learning the lipid language of plant signalling. van Leeuwen W, et al. Trends Plant Sci, 2004 Aug. PMID 15358268
    2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001333295.1
    NM_001333299.1
    NM_103704.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phosphatidylinositol binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within signal transduction ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    calcium-dependent lipid-binding family protein
    NP_175242.7
    • calcium-dependent lipid-binding family protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), Protein of unknown function DUF946 (InterPro:IPR009291), Vacuolar protein sorting-associated protein (InterPro:IPR009543), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973); BEST Arabidopsis thaliana protein match is: pleckstrin homology (PH) domain-containing protein (TAIR:AT4G17140.2); Has 2732 Blast hits to 1481 proteins in 212 species: Archae - 2; Bacteria - 15; Metazoa - 1181; Fungi - 466; Plants - 461; Viruses - 0; Other Eukaryotes - 607 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17732010..17758508 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333297.1 → NP_001320408.1  calcium-dependent lipid-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W770, A0A1P8AMP4, A0A384LIM1, A0A654ELM5
      Conserved Domains (5) summary
      cd00030
      Location:2648 → 2754
      C2; C2 domain
      COG5043
      Location:1 → 830
      MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
      pfam06101
      Location:2013 → 2171
      Vps62; Vacuolar protein sorting-associated protein 62
      pfam06650
      Location:3145 → 3452
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16908
      Location:142 → 381
      VPS13; Vacuolar sorting-associated protein 13, N-terminal

    2. NM_001333296.1 → NP_001320405.1  calcium-dependent lipid-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AMP6, A0A654ELM5

    3. NM_001333298.1 → NP_001320407.1  calcium-dependent lipid-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AMQ8, A0A654ELM5

    4. NM_103704.6 → NP_175242.7  calcium-dependent lipid-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175242.7

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ELM5, F4HWS2
      Conserved Domains (7) summary
      cd00030
      Location:2662 → 2768
      C2; C2 domain
      pfam06101
      Location:2265 → 2384
      DUF946; Plant protein of unknown function (DUF946)
      pfam06650
      Location:3366 → 3525
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam12624
      Location:25 → 131
      Chorein_N; N-terminal region of Chorein or VPS13
      pfam16908
      Location:161 → 422
      VPS13; Vacuolar sorting-associated protein 13, N-terminal
      pfam16909
      Location:3715 → 3927
      VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
      pfam16910
      Location:621 → 846
      VPS13_mid_rpt; Repeating coiled region of VPS13

    5. NM_001333295.1 → NP_001320409.1  calcium-dependent lipid-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AMQ1, A0A654ELM5

    6. NM_001333299.1 → NP_001320406.1  calcium-dependent lipid-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W770, A0A1P8AMP4, A0A384LIM1, A0A654ELM5
      Conserved Domains (5) summary
      cd00030
      Location:2648 → 2754
      C2; C2 domain
      COG5043
      Location:1 → 830
      MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
      pfam06101
      Location:2013 → 2171
      Vps62; Vacuolar protein sorting-associated protein 62
      pfam06650
      Location:3145 → 3452
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16908
      Location:142 → 381
      VPS13; Vacuolar sorting-associated protein 13, N-terminal
    Nucleotide Protein
    Heading Accession and Version

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