U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Avirulence induced gene (AIG1) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826582, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Avirulence induced gene (AIG1) family protein
    Primary source
    TAIR:AT4G09930
    Locus tag
    AT4G09930
    See related
    Araport:AT4G09930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T5L19.60; T5L19_60
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (6228556..6230079)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene methyl esterase 12 Neighboring gene FBD, F-box and Leucine Rich Repeat domains containing protein Neighboring gene ncRNA Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_117061.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Avirulence induced gene (AIG1) family protein
    NP_192731.1
    • Avirulence induced gene (AIG1) family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G09940.1); Has 4437 Blast hits to 3641 proteins in 404 species: Archae - 27; Bacteria - 424; Metazoa - 1814; Fungi - 220; Plants - 312; Viruses - 19; Other Eukaryotes - 1621 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6228556..6230079
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117061.2 → NP_192731.1  Avirulence induced gene (AIG1) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192731.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9T0F2
      UniProtKB/TrEMBL
      A0A178UVI4
      Conserved Domains (1) summary
      cd01852
      Location:27 → 232
      AIG1; AvrRpt2-Induced Gene 1 (AIG1)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9T0F2.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools