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Conserved domains on  [gi|15234852|ref|NP_192731|]
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Avirulence induced gene (AIG1) family protein [Arabidopsis thaliana]

Protein Classification

GTPase IMAP family protein( domain architecture ID 10111261)

GTPase immunity-associated protein (IMAP) family protein may function as regulator of lymphocyte survival and homeostasis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AIG1 cd01852
AvrRpt2-Induced Gene 1 (AIG1); This group represents Arabidoposis protein AIG1 ...
 27-232 9.03e-84

AvrRpt2-Induced Gene 1 (AIG1); This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).


:

Pssm-ID: 206651 [Multi-domain]  Cd Length: 201  Bit Score: 251.69  E-value: 9.03e-84
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234852  27 RTLVLIGCSGNGKSATGNSILRSEAFKSKGQAAAVTKECELKSTkRPNGQIINVIDTPGLFSLFPSNESTIREILKCSHL 106
Cdd:cd01852   1 LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESA-VWDGRRVNVIDTPGLFDTSVSPEQLSKEIIRCLSL 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234852 107 AKEGIDAVLMVFSLRsRLTEEEKSVPFVLKTLFGDSIFDYLIVVFTNEDSLIDDnvTINEYLEGS-PDFKEILAACNNRM 185
Cdd:cd01852  80 SAPGPHAFLLVVPLG-RFTEEEEQAVEELQELFGEKVLDHTIVLFTRGDDLEGG--SLEDYLEDScEALKRLLEKCGGRY 156

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*..
gi 15234852 186 VLFENrlRTSKRKKAKQVQKLLDLVEEVERKNNNKPFLFDLSHESME 232
Cdd:cd01852 157 VAFNN--KAKGREQEQQVKELLAKVEEMVRENGGKPYTNEMYEEAEE 201
PRK00409 super family cl29770
recombination and DNA strand exchange inhibitor protein; Reviewed
 271-328 1.30e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


The actual alignment was detected with superfamily member PRK00409:

Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 40.58  E-value: 1.30e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15234852  271 KVEKVIEttSLLEQKLNQEQNARlEAE---KRANKLHEESSEEIKILKEKLERAQKELEKR 328
Cdd:PRK00409 517 KLNELIA--SLEELERELEQKAE-EAEallKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE 574
 
Name Accession Description Interval E-value
AIG1 cd01852
AvrRpt2-Induced Gene 1 (AIG1); This group represents Arabidoposis protein AIG1 ...
 27-232 9.03e-84

AvrRpt2-Induced Gene 1 (AIG1); This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).


Pssm-ID: 206651 [Multi-domain]  Cd Length: 201  Bit Score: 251.69  E-value: 9.03e-84
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234852  27 RTLVLIGCSGNGKSATGNSILRSEAFKSKGQAAAVTKECELKSTkRPNGQIINVIDTPGLFSLFPSNESTIREILKCSHL 106
Cdd:cd01852   1 LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESA-VWDGRRVNVIDTPGLFDTSVSPEQLSKEIIRCLSL 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234852 107 AKEGIDAVLMVFSLRsRLTEEEKSVPFVLKTLFGDSIFDYLIVVFTNEDSLIDDnvTINEYLEGS-PDFKEILAACNNRM 185
Cdd:cd01852  80 SAPGPHAFLLVVPLG-RFTEEEEQAVEELQELFGEKVLDHTIVLFTRGDDLEGG--SLEDYLEDScEALKRLLEKCGGRY 156

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*..
gi 15234852 186 VLFENrlRTSKRKKAKQVQKLLDLVEEVERKNNNKPFLFDLSHESME 232
Cdd:cd01852 157 VAFNN--KAKGREQEQQVKELLAKVEEMVRENGGKPYTNEMYEEAEE 201
AIG1 pfam04548
AIG1 family; Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria.
 27-241 9.77e-82

AIG1 family; Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria.


Pssm-ID: 398307 [Multi-domain]  Cd Length: 200  Bit Score: 246.75  E-value: 9.77e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234852    27 RTLVLIGCSGNGKSATGNSILRSEAFKSKGQAAAVTKECELKSTkRPNGQIINVIDTPGLFSLFPSNESTIREILKCSHL 106
Cdd:pfam04548   1 LRIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSR-TWDGRIINVIDTPGLFDLSVSNDFISKEIIRCLLL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234852   107 AKEGIDAVLMVFSLRsRLTEEEKSVPFVLKTLFGDSIFDYLIVVFTNEDSLIDDNvtINEYLE-GSPDF-KEILAacnnr 184
Cdd:pfam04548  80 AEPGPHAVLLVLSLG-RFTEEEEQALRTLQELFGSKILDYMIVVFTRKDDLEDDS--LDDYLSdGCPEFlKEVLR----- 151

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15234852   185 mvlfenrlRTSKRKKAKQVQKLLDLVEEVERKNNNKPFLFDLSHESMESEAVVDEKA 241
Cdd:pfam04548 152 --------TADGEEKEEQVQQLLALVEAIVKENGGKPYTNDLYEKIKEEGERLREQQ 200
3a0901s04IAP86 TIGR00993
chloroplast protein import component Toc86/159, G and M domains; The long precursor of the 86K ...
 2-160 4.48e-06

chloroplast protein import component Toc86/159, G and M domains; The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273381 [Multi-domain]  Cd Length: 763  Bit Score: 48.41  E-value: 4.48e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234852     2 GGGLVEVDV---QTGQDACESDLPMKPSRTLVLIGCSGNGKSATGNSILRSEAFKSKGQAAAVTKECELKSTKrpNGQII 78
Cdd:TIGR00993  91 GGGAFSLDAakaMAEQLEAEGQDPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKI 168

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234852    79 NVIDTPGLFSLFpSNESTIREILKC--SHLAKEGIDAVLMVFSLRSRlTEEEKSVPfVLKTL---FGDSIFDYLIVVFTN 153
Cdd:TIGR00993 169 RVIDTPGLKSSA-SDQSKNEKILSSvkKFIKKNPPDIVLYVDRLDMQ-TRDSNDLP-LLRTItdvLGPSIWFNAIVTLTH 245


                  ....*..
gi 15234852   154 EDSLIDD 160
Cdd:TIGR00993 246 AASAPPD 252
YeeP COG3596
Predicted GTPase [General function prediction only];
28-119 6.90e-04

Predicted GTPase [General function prediction only];


Pssm-ID: 442815 [Multi-domain]  Cd Length: 318  Bit Score: 40.90  E-value: 6.90e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234852  28 TLVLIGCSGNGKSATGNSILRSEAFKSkGQAAAVTKECELKSTKRPNGQIINVIDTPGLFSlfpSNESTiREILKCSHLA 107
Cdd:COG3596  41 VIALVGKTGAGKSSLINALFGAEVAEV-GVGRPCTREIQRYRLESDGLPGLVLLDTPGLGE---VNERD-REYRELRELL 115

                        90
                ....*....|..
gi 15234852 108 KEgIDAVLMVFS 119
Cdd:COG3596 116 PE-ADLILWVVK 126
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
 271-328 1.30e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 40.58  E-value: 1.30e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15234852  271 KVEKVIEttSLLEQKLNQEQNARlEAE---KRANKLHEESSEEIKILKEKLERAQKELEKR 328
Cdd:PRK00409 517 KLNELIA--SLEELERELEQKAE-EAEallKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE 574
PRK01889 PRK01889
GTPase RsgA; Reviewed
 24-86 1.83e-03

GTPase RsgA; Reviewed


Pssm-ID: 234988 [Multi-domain]  Cd Length: 356  Bit Score: 39.53  E-value: 1.83e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15234852   24 KPSRTLVLIGCSGNGKSATGNSILRSEAFK--------SKGQAAAVTKecELKSTkrPNGQIInvIDTPGL 86
Cdd:PRK01889 193 SGGKTVALLGSSGVGKSTLVNALLGEEVQKtgavreddSKGRHTTTHR--ELHPL--PSGGLL--IDTPGM 257
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
233-327 6.24e-03

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 38.30  E-value: 6.24e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234852 233 SEAVVDEKAKKIRAMKSNYTKQEMSNWKEEEVNSPLAKKVEKVIETTSLLEQKLNQ--EQNARLEAE----KRANKLHEE 306
Cdd:COG2433 383 EELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEkdERIERLERElseaRSEERREIR 462

                        90       100
                ....*....|....*....|.
gi 15234852 307 SSEEIKILKEKLERAQKELEK 327
Cdd:COG2433 463 KDREISRLDREIERLERELEE 483
 
Name Accession Description Interval E-value
AIG1 cd01852
AvrRpt2-Induced Gene 1 (AIG1); This group represents Arabidoposis protein AIG1 ...
 27-232 9.03e-84

AvrRpt2-Induced Gene 1 (AIG1); This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).


Pssm-ID: 206651 [Multi-domain]  Cd Length: 201  Bit Score: 251.69  E-value: 9.03e-84
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234852  27 RTLVLIGCSGNGKSATGNSILRSEAFKSKGQAAAVTKECELKSTkRPNGQIINVIDTPGLFSLFPSNESTIREILKCSHL 106
Cdd:cd01852   1 LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESA-VWDGRRVNVIDTPGLFDTSVSPEQLSKEIIRCLSL 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234852 107 AKEGIDAVLMVFSLRsRLTEEEKSVPFVLKTLFGDSIFDYLIVVFTNEDSLIDDnvTINEYLEGS-PDFKEILAACNNRM 185
Cdd:cd01852  80 SAPGPHAFLLVVPLG-RFTEEEEQAVEELQELFGEKVLDHTIVLFTRGDDLEGG--SLEDYLEDScEALKRLLEKCGGRY 156

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*..
gi 15234852 186 VLFENrlRTSKRKKAKQVQKLLDLVEEVERKNNNKPFLFDLSHESME 232
Cdd:cd01852 157 VAFNN--KAKGREQEQQVKELLAKVEEMVRENGGKPYTNEMYEEAEE 201
AIG1 pfam04548
AIG1 family; Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria.
 27-241 9.77e-82

AIG1 family; Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria.


Pssm-ID: 398307 [Multi-domain]  Cd Length: 200  Bit Score: 246.75  E-value: 9.77e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234852    27 RTLVLIGCSGNGKSATGNSILRSEAFKSKGQAAAVTKECELKSTkRPNGQIINVIDTPGLFSLFPSNESTIREILKCSHL 106
Cdd:pfam04548   1 LRIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSR-TWDGRIINVIDTPGLFDLSVSNDFISKEIIRCLLL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234852   107 AKEGIDAVLMVFSLRsRLTEEEKSVPFVLKTLFGDSIFDYLIVVFTNEDSLIDDNvtINEYLE-GSPDF-KEILAacnnr 184
Cdd:pfam04548  80 AEPGPHAVLLVLSLG-RFTEEEEQALRTLQELFGSKILDYMIVVFTRKDDLEDDS--LDDYLSdGCPEFlKEVLR----- 151

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15234852   185 mvlfenrlRTSKRKKAKQVQKLLDLVEEVERKNNNKPFLFDLSHESMESEAVVDEKA 241
Cdd:pfam04548 152 --------TADGEEKEEQVQQLLALVEAIVKENGGKPYTNDLYEKIKEEGERLREQQ 200
3a0901s04IAP86 TIGR00993
chloroplast protein import component Toc86/159, G and M domains; The long precursor of the 86K ...
 2-160 4.48e-06

chloroplast protein import component Toc86/159, G and M domains; The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273381 [Multi-domain]  Cd Length: 763  Bit Score: 48.41  E-value: 4.48e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234852     2 GGGLVEVDV---QTGQDACESDLPMKPSRTLVLIGCSGNGKSATGNSILRSEAFKSKGQAAAVTKECELKSTKrpNGQII 78
Cdd:TIGR00993  91 GGGAFSLDAakaMAEQLEAEGQDPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKI 168

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234852    79 NVIDTPGLFSLFpSNESTIREILKC--SHLAKEGIDAVLMVFSLRSRlTEEEKSVPfVLKTL---FGDSIFDYLIVVFTN 153
Cdd:TIGR00993 169 RVIDTPGLKSSA-SDQSKNEKILSSvkKFIKKNPPDIVLYVDRLDMQ-TRDSNDLP-LLRTItdvLGPSIWFNAIVTLTH 245


                  ....*..
gi 15234852   154 EDSLIDD 160
Cdd:TIGR00993 246 AASAPPD 252
Toc34_like cd01853
Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like); The Toc34-like ...
 26-152 4.87e-06

Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like); The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.


Pssm-ID: 206652  Cd Length: 248  Bit Score: 47.31  E-value: 4.87e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234852  26 SRTLVLIGCSGNGKSATGNSILRSEAFKSKGQAAAVTKECELKSTKrpNGQIINVIDTPGLFSLfpSNESTIREILKC-- 103
Cdd:cd01853  31 SLTILVLGKTGVGKSSTINSIFGERKVSVSAFQSETLRPREVSRTV--DGFKLNIIDTPGLLES--QDQRVNRKILSIik 106

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 15234852 104 SHLAKEGIDAVLMVfslrSRL---TEEEKSVPfVLKTL---FGDSIFDYLIVVFT 152
Cdd:cd01853 107 RFLKKKTIDVVLYV----DRLdmyRVDNLDVP-LLRAItdsFGPSIWRNAIVVLT 156
Ras_like_GTPase cd00882
Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like ...
 30-152 8.02e-05

Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions.


Pssm-ID: 206648 [Multi-domain]  Cd Length: 161  Bit Score: 42.44  E-value: 8.02e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234852  30 VLIGCSGNGKSATGNSILRSEaFKSKGQAAAVTKECELKS-TKRPNGQIINVIDTPGLFslfpsnESTIREILKCSHLAK 108
Cdd:cd00882   1 VVVGRGGVGKSSLLNALLGGE-VGEVSDVPGTTRDPDVYVkELDKGKVKLVLVDTPGLD------EFGGLGREELARLLL 73

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....
gi 15234852 109 EGIDAVLMVFSLRSRLTEEEKSVpFVLKTLFGDSIfdYLIVVFT 152
Cdd:cd00882  74 RGADLILLVVDSTDRESEEDAKL-LILRRLRKEGI--PIILVGN 114
3a0901s02IAP34 TIGR00991
GTP-binding protein (Chloroplast Envelope Protein Translocase); [Transport and binding ...
 26-168 9.84e-05

GTP-binding protein (Chloroplast Envelope Protein Translocase); [Transport and binding proteins, Nucleosides, purines and pyrimidines]


Pssm-ID: 130064  Cd Length: 313  Bit Score: 43.35  E-value: 9.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234852    26 SRTLVLIGCSGNGKSATGNSILRSE-----AFKSKGQAAAvtkeceLKSTKRpNGQIINVIDTPGLFSLFPSNESTIrEI 100
Cdd:TIGR00991  38 SLTILVMGKGGVGKSSTVNSIIGERiatvsAFQSEGLRPM------MVSRTR-AGFTLNIIDTPGLIEGGYINDQAV-NI 109

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15234852   101 LKcSHLAKEGIDAVLMVFSLRS-RLTEEEKSVPFVLKTLFGDSIFDYLIVVFTNEDSLIDDNVTINEYL 168
Cdd:TIGR00991 110 IK-RFLLGKTIDVLLYVDRLDAyRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFF 177
YeeP COG3596
Predicted GTPase [General function prediction only];
28-119 6.90e-04

Predicted GTPase [General function prediction only];


Pssm-ID: 442815 [Multi-domain]  Cd Length: 318  Bit Score: 40.90  E-value: 6.90e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234852  28 TLVLIGCSGNGKSATGNSILRSEAFKSkGQAAAVTKECELKSTKRPNGQIINVIDTPGLFSlfpSNESTiREILKCSHLA 107
Cdd:COG3596  41 VIALVGKTGAGKSSLINALFGAEVAEV-GVGRPCTREIQRYRLESDGLPGLVLLDTPGLGE---VNERD-REYRELRELL 115

                        90
                ....*....|..
gi 15234852 108 KEgIDAVLMVFS 119
Cdd:COG3596 116 PE-ADLILWVVK 126
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
 271-328 1.30e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 40.58  E-value: 1.30e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15234852  271 KVEKVIEttSLLEQKLNQEQNARlEAE---KRANKLHEESSEEIKILKEKLERAQKELEKR 328
Cdd:PRK00409 517 KLNELIA--SLEELERELEQKAE-EAEallKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE 574
PRK01889 PRK01889
GTPase RsgA; Reviewed
 24-86 1.83e-03

GTPase RsgA; Reviewed


Pssm-ID: 234988 [Multi-domain]  Cd Length: 356  Bit Score: 39.53  E-value: 1.83e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15234852   24 KPSRTLVLIGCSGNGKSATGNSILRSEAFK--------SKGQAAAVTKecELKSTkrPNGQIInvIDTPGL 86
Cdd:PRK01889 193 SGGKTVALLGSSGVGKSTLVNALLGEEVQKtgavreddSKGRHTTTHR--ELHPL--PSGGLL--IDTPGM 257
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
233-327 6.24e-03

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 38.30  E-value: 6.24e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15234852 233 SEAVVDEKAKKIRAMKSNYTKQEMSNWKEEEVNSPLAKKVEKVIETTSLLEQKLNQ--EQNARLEAE----KRANKLHEE 306
Cdd:COG2433 383 EELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEkdERIERLERElseaRSEERREIR 462

                        90       100
                ....*....|....*....|.
gi 15234852 307 SSEEIKILKEKLERAQKELEK 327
Cdd:COG2433 463 KDREISRLDREIERLERELEE 483
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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