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    Phosphoribulokinase / Uridine kinase family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839160, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Phosphoribulokinase / Uridine kinase family
    Primary source
    TAIR:AT1G26190
    Locus tag
    AT1G26190
    See related
    Araport:AT1G26190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtTTM2; F28B23.13; F28B23_13; triphosphate tunnel metalloenzyme 2; TTM2
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (9057095..9061140, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Metal-dependent phosphohydrolase Neighboring gene ARM repeat superfamily protein Neighboring gene uncharacterized protein Neighboring gene TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein Neighboring gene ncRNA Neighboring gene SOB five-like 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis triphosphate tunnel metalloenzyme2 is a negative regulator of the salicylic acid-mediated feedback amplification loop for defense responses. Ung H, et al. Plant Physiol, 2014 Oct. PMID 25185123, Free PMC Article
    2. Triphosphate Tunnel Metalloenzyme Function in Senescence Highlights a Biological Diversification of This Protein Superfamily. Ung H, et al. Plant Physiol, 2017 Sep. PMID 28733390, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    NM_001332691.1
    NM_001332692.1
    NM_001332693.1
    NM_001332694.1
    NM_001332695.1
    NM_102384.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables inorganic diphosphate phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables pyrophosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to other organism IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of defense response to bacterium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of defense response to oomycetes IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of systemic acquired resistance IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of salicylic acid mediated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to molecule of bacterial origin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to oomycetes IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to salicylic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrial outer membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Phosphoribulokinase / Uridine kinase family
    NP_173944.1
    • Phosphoribulokinase / Uridine kinase family; FUNCTIONS IN: adenylate cyclase activity, kinase activity, phosphotransferase activity, alcohol group as acceptor, ATP binding; INVOLVED IN: biosynthetic process, cAMP biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764), Adenylate cyclase (InterPro:IPR008172); BEST Arabidopsis thaliana protein match is: Phosphoribulokinase / Uridine kinase family (TAIR:AT1G73980.1); Has 4771 Blast hits to 4715 proteins in 1747 species: Archae - 39; Bacteria - 3460; Metazoa - 396; Fungi - 136; Plants - 334; Viruses - 2; Other Eukaryotes - 404 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9057095..9061140 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102384.4 → NP_173944.1  Phosphoribulokinase / Uridine kinase family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173944.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C664
      UniProtKB/TrEMBL
      A0A178WHL9, A0A5S9VYY8
      Conserved Domains (1) summary
      PLN02318
      Location:1 → 672
      PLN02318; phosphoribulokinase/uridine kinase

    2. NM_001332691.1 → NP_001323083.1  Phosphoribulokinase / Uridine kinase family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AW02

    3. NM_001332693.1 → NP_001323086.1  Phosphoribulokinase / Uridine kinase family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AW03

    4. NM_001332692.1 → NP_001323084.1  Phosphoribulokinase / Uridine kinase family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AW50
      Conserved Domains (1) summary
      PLN02318
      Location:1 → 503
      PLN02318; phosphoribulokinase/uridine kinase

    5. NM_001332694.1 → NP_001323087.1  Phosphoribulokinase / Uridine kinase family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AW21

    6. NM_001332695.1 → NP_001323085.1  Phosphoribulokinase / Uridine kinase family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AVZ4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C664.1

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