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Conserved domains on  [gi|1063686377|ref|NP_001323084|]
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Phosphoribulokinase / Uridine kinase family [Arabidopsis thaliana]

Protein Classification

PLN02318 family protein( domain architecture ID 11476629)

PLN02318 family protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PLN02318 PLN02318
phosphoribulokinase/uridine kinase
1-503 0e+00

phosphoribulokinase/uridine kinase


:

Pssm-ID: 177952 [Multi-domain]  Cd Length: 656  Bit Score: 1008.62  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377   1 MGQDSNGIEFHQKRHGLLKDQVQLVKRRDSIRYEIVSIQDRLSFEKGFFAVIRACQLLSQKNDGIILVGVAGPSGAGKTV 80
Cdd:PLN02318    1 MAQDTSGAESPRRRHGLLKDQVQLVKRKDSDRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377  81 FTEKILNFLPSVAVISMDNYNDSSRIVDGNFDDPRLTDYDTLLKNLEDLKEGKQVEVPIYDFKSSSRVGYRTLDVPPSRI 160
Cdd:PLN02318   81 FTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQQPEEIIHQISETVYPMYKAFIEPDLQTAQIKIINKF 240
Cdd:PLN02318  161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKF 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 241 NPFTGFQSPTYILKSRKEVSVDQIKAVLSDGHTETKEETYDIYLLPPGEDPESCQSYLRMRNKDGKYSLMFEEWVTDTPF 320
Cdd:PLN02318  241 NPFSGFQNPTYILKSSRSVTVEQIKAVLSEDHTETTEETYDIYLLPPGEDPETCQSYLRMRNRDGKYSLMFEEWVTDEPF 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 321 VISPRITFEVSVRLLGGLMALGYTIATILKRNSHVFATDKVFVKIDWLEQLNRHYMQVQGKDRQLVQSTAEQLGLEGSFI 400
Cdd:PLN02318  321 IISPRITFEVSVRLLGGLMALGYTIATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQGKDRLVVKDVAEQLGLEGSYI 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 401 PRTYIEQIQLEKLINEVMALPDDLKNKLSLDEDLVssSSPKEALLRASADRvamRNKNLKRGMSHSYSTQRDKNLSKLAG 480
Cdd:PLN02318  401 PRTYIEQIQLEKLVNEVMALPEDLKTKLSLDDDLV--SSPKEALSRASADR---RNKNLKSGLSHSYSTQRDKNLSKLTG 475
                         490       500
                  ....*....|....*....|...
gi 1063686377 481 YSSSDRRYEERNHDSPANEVQIC 503
Cdd:PLN02318  476 LAVTNRRFDERNSESPAALNQGA 498
 
Name Accession Description Interval E-value
PLN02318 PLN02318
phosphoribulokinase/uridine kinase
1-503 0e+00

phosphoribulokinase/uridine kinase


Pssm-ID: 177952 [Multi-domain]  Cd Length: 656  Bit Score: 1008.62  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377   1 MGQDSNGIEFHQKRHGLLKDQVQLVKRRDSIRYEIVSIQDRLSFEKGFFAVIRACQLLSQKNDGIILVGVAGPSGAGKTV 80
Cdd:PLN02318    1 MAQDTSGAESPRRRHGLLKDQVQLVKRKDSDRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377  81 FTEKILNFLPSVAVISMDNYNDSSRIVDGNFDDPRLTDYDTLLKNLEDLKEGKQVEVPIYDFKSSSRVGYRTLDVPPSRI 160
Cdd:PLN02318   81 FTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQQPEEIIHQISETVYPMYKAFIEPDLQTAQIKIINKF 240
Cdd:PLN02318  161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKF 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 241 NPFTGFQSPTYILKSRKEVSVDQIKAVLSDGHTETKEETYDIYLLPPGEDPESCQSYLRMRNKDGKYSLMFEEWVTDTPF 320
Cdd:PLN02318  241 NPFSGFQNPTYILKSSRSVTVEQIKAVLSEDHTETTEETYDIYLLPPGEDPETCQSYLRMRNRDGKYSLMFEEWVTDEPF 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 321 VISPRITFEVSVRLLGGLMALGYTIATILKRNSHVFATDKVFVKIDWLEQLNRHYMQVQGKDRQLVQSTAEQLGLEGSFI 400
Cdd:PLN02318  321 IISPRITFEVSVRLLGGLMALGYTIATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQGKDRLVVKDVAEQLGLEGSYI 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 401 PRTYIEQIQLEKLINEVMALPDDLKNKLSLDEDLVssSSPKEALLRASADRvamRNKNLKRGMSHSYSTQRDKNLSKLAG 480
Cdd:PLN02318  401 PRTYIEQIQLEKLVNEVMALPEDLKTKLSLDDDLV--SSPKEALSRASADR---RNKNLKSGLSHSYSTQRDKNLSKLTG 475
                         490       500
                  ....*....|....*....|...
gi 1063686377 481 YSSSDRRYEERNHDSPANEVQIC 503
Cdd:PLN02318  476 LAVTNRRFDERNSESPAALNQGA 498
UMPK_like cd02028
Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the ...
67-239 4.80e-74

Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).


Pssm-ID: 238986 [Multi-domain]  Cd Length: 179  Bit Score: 232.20  E-value: 4.80e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377  67 LVGVAGPSGAGKTVFTEKILNFL----PSVAVISMDNYN---DSSRIVDGNFDDPRLTDYDTLLKNLEDLKEGKQVEVPI 139
Cdd:cd02028     1 VVGIAGPSGSGKTTFAKKLSNQLrvngIGPVVISLDDYYvprKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 140 YDFKSSSRVGYRTLDVPPSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHF-DLVKRVLRDIQRAGQQPEEIIHQisETVY 218
Cdd:cd02028    81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLnRLLRRVVRDIQFRGYSAELTILM--WPSV 158
                         170       180
                  ....*....|....*....|.
gi 1063686377 219 PMYKAFIEPDLQTAQIKIINK 239
Cdd:cd02028   159 PSGEEFIIPPLQEAAIVMFNS 179
Udk COG0572
Uridine kinase [Nucleotide transport and metabolism]; Uridine kinase is part of the Pathway ...
61-238 1.43e-44

Uridine kinase [Nucleotide transport and metabolism]; Uridine kinase is part of the Pathway/BioSystem: Pyrimidine salvage


Pssm-ID: 440337 [Multi-domain]  Cd Length: 206  Bit Score: 155.77  E-value: 1.43e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377  61 KNDGIILVGVAGPSGAGKTVFTEKILNFLP--SVAVISMDNY----NDSSRIVDG--NFDDPRLTDYDTLLKNLEDLKEG 132
Cdd:COG0572     3 RSGKPRIIGIAGPSGSGKTTFARRLAEQLGadKVVVISLDDYykdrEHLPLDERGkpNFDHPEAFDLDLLNEHLEPLKAG 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 133 KQVEVPIYDFKSSSRVGyRTLDVPPSRIVIIEGIYALS-EKLRPLLDLRVSVTggVHFD--LVKRVLRDIQRAGQQPEEI 209
Cdd:COG0572    83 ESVELPVYDFATGTRSG-ETVKVEPADVIIVEGIHALNdELLRDLLDLKIYVD--ADTDvrLIRRIVRDGEERGRTAESV 159
                         170       180
                  ....*....|....*....|....*....
gi 1063686377 210 IHQISETVYPMYKAFIEPDLQTAQIkIIN 238
Cdd:COG0572   160 IEQYWATVRPGHEQYIEPTKEYADI-VIP 187
udk TIGR00235
uridine kinase; Model contains a number of longer eukaryotic proteins and starts bringing in ...
66-236 8.29e-36

uridine kinase; Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]


Pssm-ID: 272977  Cd Length: 207  Bit Score: 132.51  E-value: 8.29e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377  66 ILVGVAGPSGAGKTVFTEKILNFL--PSVAVISMDN-YNDSSRI-----VDGNFDDPRLTDYDTLLKNLEDLKEGKQVEV 137
Cdd:TIGR00235   7 IIIGIGGGSGSGKTTVARKIYEQLgkLEIVIISQDNyYKDQSHLemaerKKTNFDHPDAFDNDLLYEHLKNLKNGSPIDV 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 138 PIYDFKSSSRVGyRTLDVPPSRIVIIEGIYAL-SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQQPEEIIHQISET 216
Cdd:TIGR00235  87 PVYDYVNHTRPK-ETVHIEPKDVVILEGIMPLfDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQYRKT 165
                         170       180
                  ....*....|....*....|
gi 1063686377 217 VYPMYKAFIEPDLQTAQIKI 236
Cdd:TIGR00235 166 VRPMYEQFVEPTKQYADLII 185
PRK pfam00485
Phosphoribulokinase / Uridine kinase family; This family matches three types of P-loop ...
67-236 1.76e-25

Phosphoribulokinase / Uridine kinase family; This family matches three types of P-loop containing kinases: phosphoribulokinases, uridine kinases and bacterial pantothenate kinases(CoaA). Arabidopsis and other organizms have a dual uridine kinase/uracil phosphoribosyltransferase protein where the N-terminal region consists of a UK domain and the C-terminal region of a UPRT domain.


Pssm-ID: 425711 [Multi-domain]  Cd Length: 196  Bit Score: 103.63  E-value: 1.76e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377  67 LVGVAGPSGAGKTVFTEKILNFLPSVAV----------ISMDNYNDSSRIVDG--------NFDDPRLTDYDTLLKNLED 128
Cdd:pfam00485   1 VIGVAGSSGSGKTTVARRIVSIFGREGVpavgiegdsfHSTDRFYMDLHPEDRkragnngySFDGPEANDFDLLYEQFKE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 129 LKEGKQVEVPIYDFKSSSRVGYRTLDVPPSrIVIIEGIYAL-SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQQPE 207
Cdd:pfam00485  81 LKEGGSVDKPIYNHVTHERDPTPELIEGAD-VLVIEGLHALyDERVAQLLDLKIYVDPDIDLELARKIQRDMAERGHSLE 159
                         170       180
                  ....*....|....*....|....*....
gi 1063686377 208 EIIHQIsETVYPMYKAFIEPDLQTAQIKI 236
Cdd:pfam00485 160 GVTDSI-LFRKPDYVNYIDPQFSYADLII 187
 
Name Accession Description Interval E-value
PLN02318 PLN02318
phosphoribulokinase/uridine kinase
1-503 0e+00

phosphoribulokinase/uridine kinase


Pssm-ID: 177952 [Multi-domain]  Cd Length: 656  Bit Score: 1008.62  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377   1 MGQDSNGIEFHQKRHGLLKDQVQLVKRRDSIRYEIVSIQDRLSFEKGFFAVIRACQLLSQKNDGIILVGVAGPSGAGKTV 80
Cdd:PLN02318    1 MAQDTSGAESPRRRHGLLKDQVQLVKRKDSDRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377  81 FTEKILNFLPSVAVISMDNYNDSSRIVDGNFDDPRLTDYDTLLKNLEDLKEGKQVEVPIYDFKSSSRVGYRTLDVPPSRI 160
Cdd:PLN02318   81 FTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQQPEEIIHQISETVYPMYKAFIEPDLQTAQIKIINKF 240
Cdd:PLN02318  161 VIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKF 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 241 NPFTGFQSPTYILKSRKEVSVDQIKAVLSDGHTETKEETYDIYLLPPGEDPESCQSYLRMRNKDGKYSLMFEEWVTDTPF 320
Cdd:PLN02318  241 NPFSGFQNPTYILKSSRSVTVEQIKAVLSEDHTETTEETYDIYLLPPGEDPETCQSYLRMRNRDGKYSLMFEEWVTDEPF 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 321 VISPRITFEVSVRLLGGLMALGYTIATILKRNSHVFATDKVFVKIDWLEQLNRHYMQVQGKDRQLVQSTAEQLGLEGSFI 400
Cdd:PLN02318  321 IISPRITFEVSVRLLGGLMALGYTIATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQGKDRLVVKDVAEQLGLEGSYI 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 401 PRTYIEQIQLEKLINEVMALPDDLKNKLSLDEDLVssSSPKEALLRASADRvamRNKNLKRGMSHSYSTQRDKNLSKLAG 480
Cdd:PLN02318  401 PRTYIEQIQLEKLVNEVMALPEDLKTKLSLDDDLV--SSPKEALSRASADR---RNKNLKSGLSHSYSTQRDKNLSKLTG 475
                         490       500
                  ....*....|....*....|...
gi 1063686377 481 YSSSDRRYEERNHDSPANEVQIC 503
Cdd:PLN02318  476 LAVTNRRFDERNSESPAALNQGA 498
UMPK_like cd02028
Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the ...
67-239 4.80e-74

Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).


Pssm-ID: 238986 [Multi-domain]  Cd Length: 179  Bit Score: 232.20  E-value: 4.80e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377  67 LVGVAGPSGAGKTVFTEKILNFL----PSVAVISMDNYN---DSSRIVDGNFDDPRLTDYDTLLKNLEDLKEGKQVEVPI 139
Cdd:cd02028     1 VVGIAGPSGSGKTTFAKKLSNQLrvngIGPVVISLDDYYvprKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 140 YDFKSSSRVGYRTLDVPPSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHF-DLVKRVLRDIQRAGQQPEEIIHQisETVY 218
Cdd:cd02028    81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLnRLLRRVVRDIQFRGYSAELTILM--WPSV 158
                         170       180
                  ....*....|....*....|.
gi 1063686377 219 PMYKAFIEPDLQTAQIKIINK 239
Cdd:cd02028   159 PSGEEFIIPPLQEAAIVMFNS 179
Udk COG0572
Uridine kinase [Nucleotide transport and metabolism]; Uridine kinase is part of the Pathway ...
61-238 1.43e-44

Uridine kinase [Nucleotide transport and metabolism]; Uridine kinase is part of the Pathway/BioSystem: Pyrimidine salvage


Pssm-ID: 440337 [Multi-domain]  Cd Length: 206  Bit Score: 155.77  E-value: 1.43e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377  61 KNDGIILVGVAGPSGAGKTVFTEKILNFLP--SVAVISMDNY----NDSSRIVDG--NFDDPRLTDYDTLLKNLEDLKEG 132
Cdd:COG0572     3 RSGKPRIIGIAGPSGSGKTTFARRLAEQLGadKVVVISLDDYykdrEHLPLDERGkpNFDHPEAFDLDLLNEHLEPLKAG 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 133 KQVEVPIYDFKSSSRVGyRTLDVPPSRIVIIEGIYALS-EKLRPLLDLRVSVTggVHFD--LVKRVLRDIQRAGQQPEEI 209
Cdd:COG0572    83 ESVELPVYDFATGTRSG-ETVKVEPADVIIVEGIHALNdELLRDLLDLKIYVD--ADTDvrLIRRIVRDGEERGRTAESV 159
                         170       180
                  ....*....|....*....|....*....
gi 1063686377 210 IHQISETVYPMYKAFIEPDLQTAQIkIIN 238
Cdd:COG0572   160 IEQYWATVRPGHEQYIEPTKEYADI-VIP 187
UMPK cd02023
Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or ...
67-236 8.14e-41

Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.


Pssm-ID: 238981 [Multi-domain]  Cd Length: 198  Bit Score: 145.78  E-value: 8.14e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377  67 LVGVAGPSGAGKTVFTEKILNFL--PSVAVISMDN-YNDSS-----RIVDGNFDDPRLTDYDTLLKNLEDLKEGKQVEVP 138
Cdd:cd02023     1 IIGIAGGSGSGKTTVAEEIIEQLgnPKVVIISQDSyYKDLSheeleERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 139 IYDFKSSSRVgYRTLDVPPSRIVIIEGIYAL-SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQQPEEIIHQISETV 217
Cdd:cd02023    81 VYDFKTHSRL-KETVTVYPADVIILEGILALyDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFV 159
                         170
                  ....*....|....*....
gi 1063686377 218 YPMYKAFIEPDLQTAQIKI 236
Cdd:cd02023   160 KPMHEQFIEPTKRYADVII 178
PRK05480 PRK05480
uridine/cytidine kinase; Provisional
65-237 6.00e-39

uridine/cytidine kinase; Provisional


Pssm-ID: 235492 [Multi-domain]  Cd Length: 209  Bit Score: 141.06  E-value: 6.00e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377  65 IILVGVAGPSGAGKTVFTEKILNFLP--SVAVISMDNY-NDSSRI-----VDGNFDDPRLTDYDTLLKNLEDLKEGKQVE 136
Cdd:PRK05480    6 PIIIGIAGGSGSGKTTVASTIYEELGdeSIAVIPQDSYyKDQSHLsfeerVKTNYDHPDAFDHDLLIEHLKALKAGKAIE 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 137 VPIYDFKSSSRVGyRTLDVPPSRIVIIEGIYALS-EKLRPLLDLRVSVtggvhfD------LVKRVLRDIQRAGQQPEEI 209
Cdd:PRK05480   86 IPVYDYTEHTRSK-ETIRVEPKDVIILEGILLLEdERLRDLMDIKIFV------DtpldirLIRRLKRDVNERGRSLESV 158
                         170       180
                  ....*....|....*....|....*...
gi 1063686377 210 IHQISETVYPMYKAFIEPDLQTAQIkII 237
Cdd:PRK05480  159 INQYLSTVRPMHLQFIEPSKRYADI-II 185
udk TIGR00235
uridine kinase; Model contains a number of longer eukaryotic proteins and starts bringing in ...
66-236 8.29e-36

uridine kinase; Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]


Pssm-ID: 272977  Cd Length: 207  Bit Score: 132.51  E-value: 8.29e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377  66 ILVGVAGPSGAGKTVFTEKILNFL--PSVAVISMDN-YNDSSRI-----VDGNFDDPRLTDYDTLLKNLEDLKEGKQVEV 137
Cdd:TIGR00235   7 IIIGIGGGSGSGKTTVARKIYEQLgkLEIVIISQDNyYKDQSHLemaerKKTNFDHPDAFDNDLLYEHLKNLKNGSPIDV 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 138 PIYDFKSSSRVGyRTLDVPPSRIVIIEGIYAL-SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQQPEEIIHQISET 216
Cdd:TIGR00235  87 PVYDYVNHTRPK-ETVHIEPKDVVILEGIMPLfDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQYRKT 165
                         170       180
                  ....*....|....*....|
gi 1063686377 217 VYPMYKAFIEPDLQTAQIKI 236
Cdd:TIGR00235 166 VRPMYEQFVEPTKQYADLII 185
PRK pfam00485
Phosphoribulokinase / Uridine kinase family; This family matches three types of P-loop ...
67-236 1.76e-25

Phosphoribulokinase / Uridine kinase family; This family matches three types of P-loop containing kinases: phosphoribulokinases, uridine kinases and bacterial pantothenate kinases(CoaA). Arabidopsis and other organizms have a dual uridine kinase/uracil phosphoribosyltransferase protein where the N-terminal region consists of a UK domain and the C-terminal region of a UPRT domain.


Pssm-ID: 425711 [Multi-domain]  Cd Length: 196  Bit Score: 103.63  E-value: 1.76e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377  67 LVGVAGPSGAGKTVFTEKILNFLPSVAV----------ISMDNYNDSSRIVDG--------NFDDPRLTDYDTLLKNLED 128
Cdd:pfam00485   1 VIGVAGSSGSGKTTVARRIVSIFGREGVpavgiegdsfHSTDRFYMDLHPEDRkragnngySFDGPEANDFDLLYEQFKE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 129 LKEGKQVEVPIYDFKSSSRVGYRTLDVPPSrIVIIEGIYAL-SEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQQPE 207
Cdd:pfam00485  81 LKEGGSVDKPIYNHVTHERDPTPELIEGAD-VLVIEGLHALyDERVAQLLDLKIYVDPDIDLELARKIQRDMAERGHSLE 159
                         170       180
                  ....*....|....*....|....*....
gi 1063686377 208 EIIHQIsETVYPMYKAFIEPDLQTAQIKI 236
Cdd:pfam00485 160 GVTDSI-LFRKPDYVNYIDPQFSYADLII 187
CYTH pfam01928
CYTH domain; These sequences are functionally identified as members of the adenylate cyclase ...
249-404 7.08e-24

CYTH domain; These sequences are functionally identified as members of the adenylate cyclase family, which catalyzes the conversion of ATP to 3',5'-cyclic AMP and pyrophosphate. Six distinct non-homologous classes of AC have been identified. The structure of three classes of adenylyl cyclases have been solved.


Pssm-ID: 396490  Cd Length: 172  Bit Score: 98.38  E-value: 7.08e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 249 PTYILKSR--KEVSVDQIKAVLSDGHTETKEETYDIYLLPPGEDPESCQSYLRMRNK-DGKYSLMFEEWVTDTPFVISPR 325
Cdd:pfam01928   2 IEIERKFLvsDEEYKDLLLLEKLRGKAEGPEEQRDIYFDTPDRDLARTDEALRIRRFgNGAYFLTLKGPGVDGPFKSREE 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 326 ITFEVS------VRLLGGLMALGYTIATILKRNSHVfatDKVFVKIDWLEQL--NRHYMQVQGKDRQLVQSTAEQL---- 393
Cdd:pfam01928  82 VNGEVSrdepdaVELLDGLGLQPVGSIKKERRRYKV---KGVLIALDVVEFLggAEVELELEVEDEEELLEAAEELellr 158
                         170
                  ....*....|....
gi 1063686377 394 ---GLEGSFIPRTY 404
Cdd:pfam01928 159 ilgLSEESKIARFY 172
PRK cd02026
Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or ...
67-236 1.54e-20

Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.


Pssm-ID: 238984 [Multi-domain]  Cd Length: 273  Bit Score: 91.63  E-value: 1.54e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377  67 LVGVAGPSGAGKTVFTEKILNFLPS--VAVISMDNYNDSSR---IVDGNFD-DPRLTDYDTLLKNLEDLKEGKQVEVPIY 140
Cdd:cd02026     1 IIGVAGDSGCGKSTFLRRLTSLFGSdlVTVICLDDYHSLDRkgrKETGITAlDPRANNFDLMYEQLKALKEGQAIEKPIY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 141 DFKSSsrvgyrTLDVP----PSRIVIIEGIYALS-EKLRPLLDLrvsvtgGVHFDL---VK---RVLRDIQRAGQQPEEI 209
Cdd:cd02026    81 NHVTG------LIDPPelikPTKIVVIEGLHPLYdERVRELLDF------SVYLDIsdeVKfawKIQRDMAERGHSLEDV 148
                         170       180
                  ....*....|....*....|....*..
gi 1063686377 210 IHQIsETVYPMYKAFIEPDLQTAQIKI 236
Cdd:cd02026   149 LASI-EARKPDFEAYIDPQKQYADVVI 174
PTZ00301 PTZ00301
uridine kinase; Provisional
68-227 2.31e-18

uridine kinase; Provisional


Pssm-ID: 140322 [Multi-domain]  Cd Length: 210  Bit Score: 83.51  E-value: 2.31e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377  68 VGVAGPSGAGKTVFTEkilNFLP---------SVAVISMDNY-NDSSRIVDG-----NFDDPRLTDYDTLLKNLEDLKEG 132
Cdd:PTZ00301    6 IGISGASGSGKSSLST---NIVSelmahcgpvSIGVICEDFYyRDQSNIPESeraytNYDHPKSLEHDLLTTHLRELKSG 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 133 KQVEVPIYDFKSSSRVGyRTLDVPPSRIVIIEGIYALSE-KLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQQPEEIIH 211
Cdd:PTZ00301   83 KTVQIPQYDYVHHTRSD-TAVTMTPKSVLIVEGILLFTNaELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIE 161
                         170
                  ....*....|....*.
gi 1063686377 212 QISETVYPMYKAFIEP 227
Cdd:PTZ00301  162 QYEATVRPMYYAYVEP 177
PRK07429 PRK07429
phosphoribulokinase; Provisional
63-236 3.46e-18

phosphoribulokinase; Provisional


Pssm-ID: 180975  Cd Length: 327  Bit Score: 85.45  E-value: 3.46e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377  63 DGIILVGVAGPSGAGKTVFTEKILNFLPS--VAVISMDNYN--DSSRIVDGNFD--DPRLTDYDTLLKNLEDLKEGKQVE 136
Cdd:PRK07429    6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEelVTVICTDDYHsyDRKQRKELGITalDPRANNLDIMYEHLKALKTGQPIL 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 137 VPIYDFKSSsrvgyrTLD----VPPSRIVIIEGIYALS-EKLRPLLDLRvsvtggVHFDL---VKR---VLRDIQRAGQQ 205
Cdd:PRK07429   86 KPIYNHETG------TFDppeyIEPNKIVVVEGLHPLYdERVRELYDFK------VYLDPpeeVKIawkIKRDMAKRGHT 153
                         170       180       190
                  ....*....|....*....|....*....|.
gi 1063686377 206 PEEIIHQIsETVYPMYKAFIEPDLQTAQIKI 236
Cdd:PRK07429  154 YEQVLAEI-EAREPDFEAYIRPQRQWADVVI 183
PLN02348 PLN02348
phosphoribulokinase
63-236 3.30e-14

phosphoribulokinase


Pssm-ID: 215198  Cd Length: 395  Bit Score: 74.50  E-value: 3.30e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377  63 DGIILVGVAGPSGAGKTVFTEKILNFLPSVA-------------------VISMDNY--ND-SSRIVDG-NFDDPRLTDY 119
Cdd:PLN02348   47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAkppkggnpdsntlisdtttVICLDDYhsLDrTGRKEKGvTALDPRANNF 126
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 120 DTLLKNLEDLKEGKQVEVPIYDFKSSsrvgyrTLDVP----PSRIVIIEGIYAL-SEKLRPLLDLRV--SVTGGVHFDLv 192
Cdd:PLN02348  127 DLMYEQVKALKEGKAVEKPIYNHVTG------LLDPPeliePPKILVIEGLHPMyDERVRDLLDFSIylDISDDVKFAW- 199
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1063686377 193 kRVLRDIQRAGQQPEEIIHQIsETVYPMYKAFIEPDLQTAQIKI 236
Cdd:PLN02348  200 -KIQRDMAERGHSLESIKASI-EARKPDFDAYIDPQKQYADVVI 241
PRK09270 PRK09270
nucleoside triphosphate hydrolase domain-containing protein; Reviewed
58-210 2.21e-08

nucleoside triphosphate hydrolase domain-containing protein; Reviewed


Pssm-ID: 236442  Cd Length: 229  Bit Score: 54.94  E-value: 2.21e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377  58 LSQKNDGIILVGVAGPSGAGKTVFTEKILNFL----PSVAV-ISMDNYNDSSRIVDGNFDDPRLTDYDT-----LLKNLE 127
Cdd:PRK09270   26 LQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLqqdgELPAIqVPMDGFHLDNAVLDAHGLRPRKGAPETfdvagLAALLR 105
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 128 DLKEGKQ-VEVPIYDfksssrvgyRTLD--------VPPS-RIVIIEGIYALSE-----KLRPLLDLRVSVTGGVHFdLV 192
Cdd:PRK09270  106 RLRAGDDeVYWPVFD---------RSLEdpvadaivVPPTaRLVIVEGNYLLLDeepwrRLAGLFDFTIFLDAPAEV-LR 175
                         170
                  ....*....|....*...
gi 1063686377 193 KRVLRDIQRAGQQPEEII 210
Cdd:PRK09270  176 ERLVARKLAGGLSPEAAE 193
PRK06696 PRK06696
uridine kinase; Validated
54-207 1.99e-05

uridine kinase; Validated


Pssm-ID: 180660  Cd Length: 223  Bit Score: 45.74  E-value: 1.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377  54 ACQLLSQKNDGIILVGVAGPSGAGKTVF----TEKILNFLPSVAVISMDNYNDSSRI--------VDGNFDDPRltDYDT 121
Cdd:PRK06696   11 AEHILTLNLTRPLRVAIDGITASGKTTFadelAEEIKKRGRPVIRASIDDFHNPRVIryrrgresAEGYYEDAY--DYTA 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 122 LLKNLEDL--KEG-KQVEVPIYDFKSSSRVGYRTLDVPPSRIVIIEGIYALSEKLRPLLDLRVSVTggVHFDL-VKR-VL 196
Cdd:PRK06696   89 LRRLLLDPlgPNGdRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPELRDLWDYKIFLD--TDFEVsRRRgAK 166
                         170
                  ....*....|.
gi 1063686377 197 RDIQRAGQQPE 207
Cdd:PRK06696  167 RDTEAFGSYEE 177
CoaA COG1072
Panthothenate kinase [Coenzyme transport and metabolism]; Panthothenate kinase is part of the ...
67-169 3.23e-05

Panthothenate kinase [Coenzyme transport and metabolism]; Panthothenate kinase is part of the Pathway/BioSystem: Pantothenate/CoA biosynthesis


Pssm-ID: 440690  Cd Length: 309  Bit Score: 46.05  E-value: 3.23e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377  67 LVGVAGPSGAGKTVFTEKILNFL------PSVAVISMDNYNdssrivdgnFDDPRLTD------------YDT--LLKNL 126
Cdd:COG1072    88 IIGIAGSVAVGKSTTARLLQALLsrwpehPKVELVTTDGFL---------YPNAVLERrglmdrkgfpesYDRrgLLRFL 158
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1063686377 127 EDLKEGKQ-VEVPIYDFKSSSRVGYRTLDVPPSRIVIIEGIYAL 169
Cdd:COG1072   159 ARVKSGDPeVRAPVYSHLLYDIVPGAIVVVDQPDILIVEGNNVL 202
PRK08233 PRK08233
hypothetical protein; Provisional
66-226 4.13e-04

hypothetical protein; Provisional


Pssm-ID: 181310 [Multi-domain]  Cd Length: 182  Bit Score: 41.27  E-value: 4.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377  66 ILVGVAGPSGAGKTVFTEKILNFLPSVAVISMDNYN------DSSRIVD--GNFDDPRLTDydtLLKNLEDLKEGKQVEV 137
Cdd:PRK08233    4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDfdncpeDICKWIDkgANYSEWVLTP---LIKDIQELIAKSNVDY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377 138 PIYDFKsssrVGYrtldvppsriviiegiyaLSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIqrAGQQPEEIIHQISETV 217
Cdd:PRK08233   81 IIVDYP----FAY------------------LNSEMRQFIDVTIFIDTPLDIAMARRILRDF--KEDTGNEIHNDLKHYL 136

                  ....*....
gi 1063686377 218 YPMYKAFIE 226
Cdd:PRK08233  137 NYARPLYLE 145
PRK07667 PRK07667
uridine kinase; Provisional
51-181 1.90e-03

uridine kinase; Provisional


Pssm-ID: 169051  Cd Length: 193  Bit Score: 39.71  E-value: 1.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063686377  51 VIRAcqLLSQKNDGIILvGVAGPSGAGKTVFTEKILNFL----PSVAVISMDNYndssrIVDGN---------------- 110
Cdd:PRK07667    6 LINI--MKKHKENRFIL-GIDGLSRSGKTTFVANLKENMkqegIPFHIFHIDDY-----IVERNkryhtgfeewyeyyyl 77
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1063686377 111 -FDDPRLTDydtllKNLEDLKEGKQVEVPIYDFKSSSrVGYRTLDVPPSRIVIIEGIYALSEKLRPLLDLRV 181
Cdd:PRK07667   78 qWDIEWLRQ-----KFFRKLQNETKLTLPFYHDETDT-CEMKKVQIPIVGVIVIEGVFLQRKEWRDFFHYMV 143
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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