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    LRP1 Lateral root primordium (LRP) protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831108, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LRP1
    Official Full Name
    Lateral root primordium (LRP) protein-like protein
    Primary source
    TAIR:AT5G12330
    Locus tag
    AT5G12330
    See related
    Araport:AT5G12330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    LATERAL ROOT PRIMORDIUM 1
    Summary
    A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.
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    Genomic context

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    See LRP1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (3987375..3989876, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene ankyrin repeat family protein Neighboring gene miscRNA Neighboring gene DUF4228 domain protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The beta-subunit of the Arabidopsis G protein negatively regulates auxin-induced cell division and affects multiple developmental processes. Ullah H, et al. Plant Cell, 2003 Feb. PMID 12566580, Free PMC Article
    2. Regulation of root elongation by histone acetylation in Arabidopsis. Krichevsky A, et al. J Mol Biol, 2009 Jan 9. PMID 18835563, Free PMC Article
    3. Functionally redundant SHI family genes regulate Arabidopsis gynoecium development in a dose-dependent manner. Kuusk S, et al. Plant J, 2006 Jul. PMID 16740146
    4. SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Estornell LH, et al. Front Plant Sci, 2018. PMID 29491878, Free PMC Article
    5. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203366.1
    NM_121271.4
    NM_203042.1
    NM_203043.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein homodimerization activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within anther development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to auxin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    Lateral root primordium (LRP) protein-like protein
    NP_001190295.1
    • LATERAL ROOT PRIMORDIUM 1 (LRP1); FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: response to auxin stimulus, root development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Protein of unknown function DUF702 (InterPro:IPR007818), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2).
    NP_568266.1
    • LATERAL ROOT PRIMORDIUM 1 (LRP1); FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: response to auxin stimulus, root development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974771.1
    • LATERAL ROOT PRIMORDIUM 1 (LRP1); FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: response to auxin stimulus, root development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_974772.1
    • LATERAL ROOT PRIMORDIUM 1 (LRP1); FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: response to auxin stimulus, root development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3987375..3989876 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121271.4 → NP_568266.1  Lateral root primordium (LRP) protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568266.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K0X0, Q38848, Q3E9I3, Q94CK9
      UniProtKB/TrEMBL
      A0A178URJ4
      Conserved Domains (3) summary
      TIGR01623
      Location:112 → 153
      put_zinc_LRP1; putative zinc finger domain, LRP1 type
      TIGR01624
      Location:222 → 270
      LRP1_Cterm; LRP1 C-terminal domain
      pfam05142
      Location:112 → 271
      DUF702; Domain of unknown function (DUF702)

    2. NM_001203366.1 → NP_001190295.1  Lateral root primordium (LRP) protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190295.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G0H4
      Conserved Domains (3) summary
      TIGR01623
      Location:199 → 240
      put_zinc_LRP1; putative zinc finger domain, LRP1 type
      TIGR01624
      Location:309 → 357
      LRP1_Cterm; LRP1 C-terminal domain
      pfam05142
      Location:199 → 358
      DUF702; Domain of unknown function (DUF702)

    3. NM_203042.1 → NP_974771.1  Lateral root primordium (LRP) protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974771.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K0X0, Q38848, Q3E9I3, Q94CK9
      UniProtKB/TrEMBL
      A0A178URJ4
      Conserved Domains (3) summary
      TIGR01623
      Location:112 → 153
      put_zinc_LRP1; putative zinc finger domain, LRP1 type
      TIGR01624
      Location:222 → 270
      LRP1_Cterm; LRP1 C-terminal domain
      pfam05142
      Location:112 → 271
      DUF702; Domain of unknown function (DUF702)

    4. NM_203043.2 → NP_974772.1  Lateral root primordium (LRP) protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974772.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94CK9
      Conserved Domains (2) summary
      TIGR01623
      Location:112 → 153
      put_zinc_LRP1; putative zinc finger domain, LRP1 type
      pfam05142
      Location:112 → 213
      DUF702; Domain of unknown function (DUF702)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94CK9.1

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