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Conserved domains on  [gi|42573349|ref|NP_974771|]
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Lateral root primordium (LRP) protein-like protein [Arabidopsis thaliana]

Protein Classification

SHI family protein( domain architecture ID 12060848)

SHI family protein is a DUF702 domain-containing protein similar to Arabidopsis thaliana protein LATERAL ROOT PRIMORDIUM 1, protein SHI RELATED SEQUENCE 1-7, and protein SHORT INTERNODES

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF702 pfam05142
Domain of unknown function (DUF702); Members of this family are found in various putative zinc ...
 112-271 8.43e-79

Domain of unknown function (DUF702); Members of this family are found in various putative zinc finger proteins.


:

Pssm-ID: 461560 [Multi-domain]  Cd Length: 154  Bit Score: 236.89  E-value: 8.43e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573349   112 CQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQ-----VMPTGANPTAGSSLSTSSGTKKPRIVGSq 186
Cdd:pfam05142   5 CQDCGNQAKKDCPHMRCRTCCKSRGFDCPTHVKSTWVPAAKRRERQqqlaaLQQQQQAVSAGSSGGSGSGSKRPREGPS- 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573349   187 qqqqqQATSHTSTSN-TPPQSFETSSSrqdgggsreaWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFL 265
Cdd:pfam05142  84 -----ATTSHTSTSNaTTPRSFDTKSS----------FPREVSSPAVFRCVRVSSIDDGEDEYAYQTAVNIGGHVFKGIL 148


                  ....*.
gi 42573349   266 YDQGLE 271
Cdd:pfam05142 149 YDQGPD 154
 
Name Accession Description Interval E-value
DUF702 pfam05142
Domain of unknown function (DUF702); Members of this family are found in various putative zinc ...
 112-271 8.43e-79

Domain of unknown function (DUF702); Members of this family are found in various putative zinc finger proteins.


Pssm-ID: 461560 [Multi-domain]  Cd Length: 154  Bit Score: 236.89  E-value: 8.43e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573349   112 CQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQ-----VMPTGANPTAGSSLSTSSGTKKPRIVGSq 186
Cdd:pfam05142   5 CQDCGNQAKKDCPHMRCRTCCKSRGFDCPTHVKSTWVPAAKRRERQqqlaaLQQQQQAVSAGSSGGSGSGSKRPREGPS- 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573349   187 qqqqqQATSHTSTSN-TPPQSFETSSSrqdgggsreaWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFL 265
Cdd:pfam05142  84 -----ATTSHTSTSNaTTPRSFDTKSS----------FPREVSSPAVFRCVRVSSIDDGEDEYAYQTAVNIGGHVFKGIL 148


                  ....*.
gi 42573349   266 YDQGLE 271
Cdd:pfam05142 149 YDQGPD 154
LRP1_Cterm TIGR01624
LRP1 C-terminal domain; This model represents a tightly conserved small domain found in LRP1 ...
 222-270 3.98e-25

LRP1 C-terminal domain; This model represents a tightly conserved small domain found in LRP1 and related plant proteins. This family also contains a well-conserved putative zinc finger domain (TIGR01623). The rest of the sequence of most members consists of highly divergent, low-complexity sequence.


Pssm-ID: 273722  Cd Length: 50  Bit Score: 95.29  E-value: 3.98e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 42573349   222 AWPGQVRAAAVFKCVRVTAVEDGD-DEYAYQAVVKIGGHVFKGFLYDQGL 270
Cdd:TIGR01624   1 GFPGEVSAPAVFKCVRVTAIDDGEqAEYAYQATVTIGGHVFKGFLHDQGL 50
 
Name Accession Description Interval E-value
DUF702 pfam05142
Domain of unknown function (DUF702); Members of this family are found in various putative zinc ...
 112-271 8.43e-79

Domain of unknown function (DUF702); Members of this family are found in various putative zinc finger proteins.


Pssm-ID: 461560 [Multi-domain]  Cd Length: 154  Bit Score: 236.89  E-value: 8.43e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573349   112 CQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQ-----VMPTGANPTAGSSLSTSSGTKKPRIVGSq 186
Cdd:pfam05142   5 CQDCGNQAKKDCPHMRCRTCCKSRGFDCPTHVKSTWVPAAKRRERQqqlaaLQQQQQAVSAGSSGGSGSGSKRPREGPS- 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573349   187 qqqqqQATSHTSTSN-TPPQSFETSSSrqdgggsreaWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFL 265
Cdd:pfam05142  84 -----ATTSHTSTSNaTTPRSFDTKSS----------FPREVSSPAVFRCVRVSSIDDGEDEYAYQTAVNIGGHVFKGIL 148


                  ....*.
gi 42573349   266 YDQGLE 271
Cdd:pfam05142 149 YDQGPD 154
LRP1_Cterm TIGR01624
LRP1 C-terminal domain; This model represents a tightly conserved small domain found in LRP1 ...
 222-270 3.98e-25

LRP1 C-terminal domain; This model represents a tightly conserved small domain found in LRP1 and related plant proteins. This family also contains a well-conserved putative zinc finger domain (TIGR01623). The rest of the sequence of most members consists of highly divergent, low-complexity sequence.


Pssm-ID: 273722  Cd Length: 50  Bit Score: 95.29  E-value: 3.98e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 42573349   222 AWPGQVRAAAVFKCVRVTAVEDGD-DEYAYQAVVKIGGHVFKGFLYDQGL 270
Cdd:TIGR01624   1 GFPGEVSAPAVFKCVRVTAIDDGEqAEYAYQATVTIGGHVFKGFLHDQGL 50
put_zinc_LRP1 TIGR01623
putative zinc finger domain, LRP1 type; This model represents a putative zinc finger domain ...
 112-153 2.31e-24

putative zinc finger domain, LRP1 type; This model represents a putative zinc finger domain found in plants. Arabidopsis thaliana has at least 10 distinct members. Proteins containing this domain, including LRP1, generally share the same size, about 300 amino acids, and architecture. This 43-residue domain, and a more C-terminal companion domain of similar size, appear as tightly conserved islands of sequence similarity. The remainder consists largely of low-complexity sequence. Several animal proteins have regions with matching patterns of Cys, Gly, and His residues. These are not included in the model but score between trusted and noise cutoffs.


Pssm-ID: 130684  Cd Length: 43  Bit Score: 93.04  E-value: 2.31e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 42573349   112 CQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARR 153
Cdd:TIGR01623   2 CQDCGNQAKKECLFERCRTCCKSRGFHCVTHVKSTWIPAARR 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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