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    GH9B7 glycosyl hydrolase 9B7 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843902, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GH9B7
    Official Full Name
    glycosyl hydrolase 9B7
    Primary source
    TAIR:AT1G75680
    Locus tag
    AT1G75680
    See related
    Araport:AT1G75680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtGH9B7; F10A5.13; F10A5_13; glycosyl hydrolase 9B7
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    Genomic context

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    See GH9B7 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (28417052..28419635, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene 5'-3' exoribonuclease 3 Neighboring gene DNA-directed RNA polymerase Neighboring gene ncRNA Neighboring gene DnaJ/Hsp40 cysteine-rich domain superfamily protein Neighboring gene HVA22-like protein G

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Tip Growth Defective1 interacts with the cellulose synthase complex to regulate cellulose synthesis in Arabidopsis thaliana. Lampugnani ER, et al. PLoS One, 2024. PMID 38358988, Free PMC Article
    2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_106219.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cellulase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    glycosyl hydrolase 9B7
    NP_177697.1
    • glycosyl hydrolase 9B7 (GH9B7); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B5 (TAIR:AT1G19940.1); Has 1881 Blast hits to 1863 proteins in 273 species: Archae - 2; Bacteria - 718; Metazoa - 187; Fungi - 17; Plants - 915; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28417052..28419635 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106219.3 → NP_177697.1  glycosyl hydrolase 9B7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177697.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LCP6, Q9LR07
      UniProtKB/TrEMBL
      A0A178WDZ1, A0A5S9WUQ1
      Conserved Domains (2) summary
      PLN02345
      Location:61 → 525
      PLN02345; endoglucanase
      PLN02420
      Location:1 → 505
      PLN02420; endoglucanase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LCP6.2

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