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Arabidopsis thaliana glycosyl hydrolase 9B7 (GH9B7), mRNA

NCBI Reference Sequence: NM_106219.3

FASTA Graphics 

LOCUS       NM_106219               2145 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana glycosyl hydrolase 9B7 (GH9B7), mRNA.
ACCESSION   NM_106219
VERSION     NM_106219.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2145)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (bases 1 to 2145)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2145)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2145)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (bases 1 to 2145)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003070).
            
            On Sep 12, 2016 this sequence version replaced NM_106219.2.
FEATURES             Location/Qualifiers
     source          1..2145
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     gene            1..2145
                     /gene="GH9B7"
                     /locus_tag="AT1G75680"
                     /gene_synonym="AtGH9B7; F10A5.13; F10A5_13; glycosyl
                     hydrolase 9B7"
                     /db_xref="Araport:AT1G75680"
                     /db_xref="GeneID:843902"
                     /db_xref="TAIR:AT1G75680"
     CDS             405..1982
                     /gene="GH9B7"
                     /locus_tag="AT1G75680"
                     /gene_synonym="AtGH9B7; F10A5.13; F10A5_13; glycosyl
                     hydrolase 9B7"
                     /inference="Similar to RNA sequence,
                     EST:INSD:BP640341.1,INSD:BP613341.1,INSD:ES084082.1,
                     INSD:BP613198.1,INSD:EL258828.1,INSD:BP566688.1,
                     INSD:AV809614.1,INSD:BP866337.1,INSD:BP616141.1,
                     INSD:AV799979.1,INSD:AV532443.1,INSD:BP619624.1,
                     INSD:AV552025.1,INSD:EL968627.1,INSD:BP620849.1,
                     INSD:AV565952.1,INSD:AV522260.1,INSD:BP830298.1,
                     INSD:BP567268.1,INSD:AA394521.1,INSD:BP592914.1,
                     INSD:BP588716.1,INSD:BP626077.1,INSD:DR381757.1,
                     INSD:BP602092.1,INSD:BP840309.1,INSD:BP578288.1,
                     INSD:CF651815.1,INSD:BP582522.1,INSD:BP573363.1,
                     INSD:EH962810.1,INSD:EH904908.1,INSD:EL054671.1,
                     INSD:BP587349.1,INSD:R30541.1,INSD:AV831698.1,
                     INSD:BP819784.1,INSD:BP605351.1,INSD:EL132810.1,
                     INSD:BE528532.1,INSD:EL089583.1,INSD:BP617559.1,
                     INSD:BP584729.1,INSD:EL189422.1,INSD:T45784.1,
                     INSD:AV547059.1,INSD:AI997765.1,INSD:BP811724.1,
                     INSD:AV562841.1,INSD:AA597690.1,INSD:BP599818.1,
                     INSD:AV786429.1,INSD:AV782221.1,INSD:T21491.1,
                     INSD:BE530363.1,INSD:BP652106.1,INSD:AV789773.1,
                     INSD:BP596340.1,INSD:AV560026.1,INSD:EL104507.1,
                     INSD:EH982267.1,INSD:BP847080.1,INSD:BP627118.1,
                     INSD:BP618616.1,INSD:BP564739.1,INSD:AV817460.1,
                     INSD:AV563923.1,INSD:BP560622.2,INSD:BP614078.1,
                     INSD:ES036966.1,INSD:CK121400.1,INSD:BE525196.1,
                     INSD:ES089403.1,INSD:ES124002.1,INSD:EL028113.1,
                     INSD:EL130917.1,INSD:BP578166.1,INSD:ES149783.1,
                     INSD:EL986472.1,INSD:ES159305.1,INSD:EL104135.1,
                     INSD:BE525193.1,INSD:ES007582.1,INSD:EL255609.1,
                     INSD:EL234206.1,INSD:DR348612.1,INSD:EL980174.1,
                     INSD:EL289558.1,INSD:AV524744.1,INSD:AV524525.1,
                     INSD:EL207001.1,INSD:DR348614.1,INSD:BP794128.1,
                     INSD:BP626756.1,INSD:AV801220.1,INSD:AV519182.1,
                     INSD:ES191498.1,INSD:EL084815.1,INSD:EL209561.1,
                     INSD:ES107571.1,INSD:BP824528.1,INSD:EL120100.1,
                     INSD:EL331217.1,INSD:EL325109.1,INSD:EH956886.1,
                     INSD:AV542774.1,INSD:EL125366.1,INSD:EH913816.1,
                     INSD:AV798923.1,INSD:BP568914.1,INSD:ES140120.1,
                     INSD:ES106887.1,INSD:EH971387.1,INSD:AV560546.1,
                     INSD:BP820439.1,INSD:BP851071.1,INSD:EH893401.1,
                     INSD:EL205381.1,INSD:AV553234.1,INSD:EH806471.1,
                     INSD:AV518144.1,INSD:EL010917.1,INSD:BE523240.1,
                     INSD:EL325567.1,INSD:ES102893.1,INSD:BP583919.1,
                     INSD:EL254321.1,INSD:ES041984.1,INSD:BP578863.1,
                     INSD:BP582762.1,INSD:BP624838.1,INSD:BP593110.1,
                     INSD:BP868888.1,INSD:AV830018.1,INSD:EL018394.1,
                     INSD:EL194800.1,INSD:EL014037.1,INSD:AV811014.1,
                     INSD:AV565631.1,INSD:EL267593.1,INSD:BP640782.1,
                     INSD:BP856930.1,INSD:BP592881.1,INSD:DR348613.1,
                     INSD:BP612552.1,INSD:ES066101.1,INSD:EL279809.1,
                     INSD:AV793159.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AY150451.1,INSD:AY086475.1,INSD:AY039938.1"
                     /note="glycosyl hydrolase 9B7 (GH9B7); FUNCTIONS IN:
                     hydrolase activity, hydrolyzing O-glycosyl compounds,
                     catalytic activity; INVOLVED IN: carbohydrate metabolic
                     process; LOCATED IN: plasma membrane; EXPRESSED IN: 23
                     plant structures; EXPRESSED DURING: 13 growth stages;
                     CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase
                     (InterPro:IPR012341), Glycoside hydrolase, family 9,
                     active site (InterPro:IPR018221), Six-hairpin
                     glycosidase-like (InterPro:IPR008928), Glycoside
                     hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis
                     thaliana protein match is: glycosyl hydrolase 9B5
                     (TAIR:AT1G19940.1); Has 1881 Blast hits to 1863 proteins
                     in 273 species: Archae - 2; Bacteria - 718; Metazoa - 187;
                     Fungi - 17; Plants - 915; Viruses - 0; Other Eukaryotes -
                     42 (source: NCBI BLink)."
                     /codon_start=1
                     /product="glycosyl hydrolase 9B7"
                     /protein_id="NP_177697.1"
                     /db_xref="Araport:AT1G75680"
                     /db_xref="GeneID:843902"
                     /db_xref="TAIR:AT1G75680"
                     /translation="MEEKSKSRGWCGWFIAIIVLASVILAVVYTVKLRTKKSGDDDGG
                     GPVPGPPGAIDKKYADALKLALQFFDIQKSGKLENNKIPWRGDSGLKDGSEDNLDLSK
                     GLYDAGDHIKFGFPMAFTATVLSWSILEYGDQMNAVNQLDPAKDSLRWITDYLIKAHP
                     SDNVLYIQVGDPKVDHPCWERPEDMKEKRPLTKIDVDTPGTEVAAETAAAMASASLVF
                     KDSDPTYSATLLKHAKQLFNFADTKRGSYSVNIPEVQKFYNSTGYGDELLWAASWLYH
                     ATEDKTYLDYVSNHGKEFASFGNPTWFSWDNKLAGTQVLLSRLLFFKKDLSGSKGLGN
                     YRNTAKAVMCGLLPKSPTSTASRTNGGLIWVSEWNSMQQSVSSAFLASLFSDYMLTSR
                     IHKISCDGKIFKATELRDFAKSQADYMLGKNPLGTSFVVGYGDKYPQFVHHRGASIPA
                     DATTGCLDGFKWFNSTKPNPNIAYGALVGGPFFNETFTDSRENPMQNEPTTYNNALLV
                     GLLSSLVTTSSTLQSLK"
ORIGIN      
        1 gacactggag ttggactcgg ctcaatttaa aggggtagtt cagtaatcat acctcacatt
       61 actacactct tgattaatat ataaaaccaa atcagttttt aaaaataagg gaaaatccta
      121 ataaaggaga agaaaaacag atctgaaatc ccgcttgata ctccaccgac tttaaactac
      181 tggtttttgt ttgatttaag tatagtgtta atgactcctc tctccacctt cctttgattc
      241 tacctatcac ttcccttgcc gttgctccat cttcatcact agtcactata caccaatctt
      301 agatccggga agctaatttc tcttctccga tcggtgaatg cagttacatt gacctcggat
      361 ctaaccaagc tcttctggtt tccagctctc tggaattcaa aaaaatggag gagaaatcca
      421 agtcaagagg ttggtgcggt tggttcatcg ccattattgt gctagcttct gttatcctcg
      481 ccgtcgttta cactgttaaa ttgagaacga agaaatccgg tgacgatgac ggtggcggtc
      541 ccgttcctgg acctcccggc gccattgata agaaatacgc cgacgctctt aagctcgctt
      601 tgcagttctt cgatatccag aaatctggta aattggagaa caataagata ccttggagag
      661 gagattcagg tcttaaagat ggaagtgaag ataatctgga tctttccaaa ggcttatatg
      721 atgctggaga tcatataaag tttggttttc caatggcttt cactgctaca gttttgtcat
      781 ggtcgattct tgagtatggt gatcaaatga atgcagtgaa ccaattggat cctgctaaag
      841 actctctccg gtggatcact gactatctta tcaaagctca tccttctgac aatgtcctct
      901 atatccaggt gggagatcca aaagtagatc atccatgctg ggagagacca gaggatatga
      961 aagagaagag accacttact aaaattgatg tagatactcc agggacagag gttgctgctg
     1021 aaactgctgc agctatggct tcagcgtctt tggtgtttaa ggatagtgat cctacatatt
     1081 cagcaacgct tctgaaacat gcgaagcagt tgtttaattt tgcagataca aagagaggct
     1141 cttacagtgt taacatacct gaggttcaga agttttacaa ttcgactgga tatggtgatg
     1201 agctactatg ggcagctagt tggttgtatc atgcaacaga ggataaaact taccttgatt
     1261 atgtgtctaa tcatggaaaa gaatttgcta gttttggaaa tcctacttgg tttagttggg
     1321 acaacaagct tgcaggaaca caggtactat tatcaagatt actcttcttt aagaaagatt
     1381 tatcaggaag caagggactt ggaaattaca ggaacacagc taaagctgtc atgtgtggac
     1441 ttctaccaaa gtctccaaca tctacagcta gtagaacaaa cggtggtctt atatgggtta
     1501 gtgaatggaa ctcgatgcaa caatccgttt cgtcagcgtt tttagcctcg cttttcagtg
     1561 attacatgct cacttcccgt atccataaaa tatcttgcga cgggaaaatc ttcaaagcaa
     1621 cagagcttag agatttcgcc aaatcgcagg ctgattacat gctggggaag aatccgttgg
     1681 gaacgagctt cgtggtgggt tatggagaca aatacccaca atttgtgcat catagaggag
     1741 cttcgatccc ggcagatgca acaacgggtt gcttagatgg attcaaatgg tttaactcga
     1801 cgaaaccaaa cccaaacata gcatatggtg cactcgtagg tggacctttc ttcaatgaga
     1861 cgttcactga ctcacgagag aacccaatgc agaacgagcc aaccacttac aacaatgcac
     1921 tcctcgttgg tctcttgtct agtcttgtca ctacatcttc tactttacag tcgttgaagt
     1981 gagctttgcg tgttttagcc ttcttattga aaatcacatt gcttcatttt tatttgtaat
     2041 tttttaaaaa aaatcgtggg tgtgtgtgta ttcacgttgt gtattgcttg atatgttgat
     2101 gcgtgtaacc aaacaattag ttgctctacg aatccaaaat tgagg
//
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Reference sequence information

More about the GH9B7 gene

  • GH9B7 gene
    Also Known As: AT1G75680, AtGH9B7, F10...

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