LOCUS NM_106219 2145 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana glycosyl hydrolase 9B7 (GH9B7), mRNA.
ACCESSION NM_106219
VERSION NM_106219.3
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 2145)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (bases 1 to 2145)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2145)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 2145)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (bases 1 to 2145)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003070).
On Sep 12, 2016 this sequence version replaced NM_106219.2.
FEATURES Location/Qualifiers
source 1..2145
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
gene 1..2145
/gene="GH9B7"
/locus_tag="AT1G75680"
/gene_synonym="AtGH9B7; F10A5.13; F10A5_13; glycosyl
hydrolase 9B7"
/db_xref="Araport:AT1G75680"
/db_xref="GeneID:843902"
/db_xref="TAIR:AT1G75680"
CDS 405..1982
/gene="GH9B7"
/locus_tag="AT1G75680"
/gene_synonym="AtGH9B7; F10A5.13; F10A5_13; glycosyl
hydrolase 9B7"
/inference="Similar to RNA sequence,
EST:INSD:BP640341.1,INSD:BP613341.1,INSD:ES084082.1,
INSD:BP613198.1,INSD:EL258828.1,INSD:BP566688.1,
INSD:AV809614.1,INSD:BP866337.1,INSD:BP616141.1,
INSD:AV799979.1,INSD:AV532443.1,INSD:BP619624.1,
INSD:AV552025.1,INSD:EL968627.1,INSD:BP620849.1,
INSD:AV565952.1,INSD:AV522260.1,INSD:BP830298.1,
INSD:BP567268.1,INSD:AA394521.1,INSD:BP592914.1,
INSD:BP588716.1,INSD:BP626077.1,INSD:DR381757.1,
INSD:BP602092.1,INSD:BP840309.1,INSD:BP578288.1,
INSD:CF651815.1,INSD:BP582522.1,INSD:BP573363.1,
INSD:EH962810.1,INSD:EH904908.1,INSD:EL054671.1,
INSD:BP587349.1,INSD:R30541.1,INSD:AV831698.1,
INSD:BP819784.1,INSD:BP605351.1,INSD:EL132810.1,
INSD:BE528532.1,INSD:EL089583.1,INSD:BP617559.1,
INSD:BP584729.1,INSD:EL189422.1,INSD:T45784.1,
INSD:AV547059.1,INSD:AI997765.1,INSD:BP811724.1,
INSD:AV562841.1,INSD:AA597690.1,INSD:BP599818.1,
INSD:AV786429.1,INSD:AV782221.1,INSD:T21491.1,
INSD:BE530363.1,INSD:BP652106.1,INSD:AV789773.1,
INSD:BP596340.1,INSD:AV560026.1,INSD:EL104507.1,
INSD:EH982267.1,INSD:BP847080.1,INSD:BP627118.1,
INSD:BP618616.1,INSD:BP564739.1,INSD:AV817460.1,
INSD:AV563923.1,INSD:BP560622.2,INSD:BP614078.1,
INSD:ES036966.1,INSD:CK121400.1,INSD:BE525196.1,
INSD:ES089403.1,INSD:ES124002.1,INSD:EL028113.1,
INSD:EL130917.1,INSD:BP578166.1,INSD:ES149783.1,
INSD:EL986472.1,INSD:ES159305.1,INSD:EL104135.1,
INSD:BE525193.1,INSD:ES007582.1,INSD:EL255609.1,
INSD:EL234206.1,INSD:DR348612.1,INSD:EL980174.1,
INSD:EL289558.1,INSD:AV524744.1,INSD:AV524525.1,
INSD:EL207001.1,INSD:DR348614.1,INSD:BP794128.1,
INSD:BP626756.1,INSD:AV801220.1,INSD:AV519182.1,
INSD:ES191498.1,INSD:EL084815.1,INSD:EL209561.1,
INSD:ES107571.1,INSD:BP824528.1,INSD:EL120100.1,
INSD:EL331217.1,INSD:EL325109.1,INSD:EH956886.1,
INSD:AV542774.1,INSD:EL125366.1,INSD:EH913816.1,
INSD:AV798923.1,INSD:BP568914.1,INSD:ES140120.1,
INSD:ES106887.1,INSD:EH971387.1,INSD:AV560546.1,
INSD:BP820439.1,INSD:BP851071.1,INSD:EH893401.1,
INSD:EL205381.1,INSD:AV553234.1,INSD:EH806471.1,
INSD:AV518144.1,INSD:EL010917.1,INSD:BE523240.1,
INSD:EL325567.1,INSD:ES102893.1,INSD:BP583919.1,
INSD:EL254321.1,INSD:ES041984.1,INSD:BP578863.1,
INSD:BP582762.1,INSD:BP624838.1,INSD:BP593110.1,
INSD:BP868888.1,INSD:AV830018.1,INSD:EL018394.1,
INSD:EL194800.1,INSD:EL014037.1,INSD:AV811014.1,
INSD:AV565631.1,INSD:EL267593.1,INSD:BP640782.1,
INSD:BP856930.1,INSD:BP592881.1,INSD:DR348613.1,
INSD:BP612552.1,INSD:ES066101.1,INSD:EL279809.1,
INSD:AV793159.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY150451.1,INSD:AY086475.1,INSD:AY039938.1"
/note="glycosyl hydrolase 9B7 (GH9B7); FUNCTIONS IN:
hydrolase activity, hydrolyzing O-glycosyl compounds,
catalytic activity; INVOLVED IN: carbohydrate metabolic
process; LOCATED IN: plasma membrane; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase
(InterPro:IPR012341), Glycoside hydrolase, family 9,
active site (InterPro:IPR018221), Six-hairpin
glycosidase-like (InterPro:IPR008928), Glycoside
hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis
thaliana protein match is: glycosyl hydrolase 9B5
(TAIR:AT1G19940.1); Has 1881 Blast hits to 1863 proteins
in 273 species: Archae - 2; Bacteria - 718; Metazoa - 187;
Fungi - 17; Plants - 915; Viruses - 0; Other Eukaryotes -
42 (source: NCBI BLink)."
/codon_start=1
/product="glycosyl hydrolase 9B7"
/protein_id="NP_177697.1"
/db_xref="Araport:AT1G75680"
/db_xref="GeneID:843902"
/db_xref="TAIR:AT1G75680"
/translation="MEEKSKSRGWCGWFIAIIVLASVILAVVYTVKLRTKKSGDDDGG
GPVPGPPGAIDKKYADALKLALQFFDIQKSGKLENNKIPWRGDSGLKDGSEDNLDLSK
GLYDAGDHIKFGFPMAFTATVLSWSILEYGDQMNAVNQLDPAKDSLRWITDYLIKAHP
SDNVLYIQVGDPKVDHPCWERPEDMKEKRPLTKIDVDTPGTEVAAETAAAMASASLVF
KDSDPTYSATLLKHAKQLFNFADTKRGSYSVNIPEVQKFYNSTGYGDELLWAASWLYH
ATEDKTYLDYVSNHGKEFASFGNPTWFSWDNKLAGTQVLLSRLLFFKKDLSGSKGLGN
YRNTAKAVMCGLLPKSPTSTASRTNGGLIWVSEWNSMQQSVSSAFLASLFSDYMLTSR
IHKISCDGKIFKATELRDFAKSQADYMLGKNPLGTSFVVGYGDKYPQFVHHRGASIPA
DATTGCLDGFKWFNSTKPNPNIAYGALVGGPFFNETFTDSRENPMQNEPTTYNNALLV
GLLSSLVTTSSTLQSLK"
ORIGIN
1 gacactggag ttggactcgg ctcaatttaa aggggtagtt cagtaatcat acctcacatt
61 actacactct tgattaatat ataaaaccaa atcagttttt aaaaataagg gaaaatccta
121 ataaaggaga agaaaaacag atctgaaatc ccgcttgata ctccaccgac tttaaactac
181 tggtttttgt ttgatttaag tatagtgtta atgactcctc tctccacctt cctttgattc
241 tacctatcac ttcccttgcc gttgctccat cttcatcact agtcactata caccaatctt
301 agatccggga agctaatttc tcttctccga tcggtgaatg cagttacatt gacctcggat
361 ctaaccaagc tcttctggtt tccagctctc tggaattcaa aaaaatggag gagaaatcca
421 agtcaagagg ttggtgcggt tggttcatcg ccattattgt gctagcttct gttatcctcg
481 ccgtcgttta cactgttaaa ttgagaacga agaaatccgg tgacgatgac ggtggcggtc
541 ccgttcctgg acctcccggc gccattgata agaaatacgc cgacgctctt aagctcgctt
601 tgcagttctt cgatatccag aaatctggta aattggagaa caataagata ccttggagag
661 gagattcagg tcttaaagat ggaagtgaag ataatctgga tctttccaaa ggcttatatg
721 atgctggaga tcatataaag tttggttttc caatggcttt cactgctaca gttttgtcat
781 ggtcgattct tgagtatggt gatcaaatga atgcagtgaa ccaattggat cctgctaaag
841 actctctccg gtggatcact gactatctta tcaaagctca tccttctgac aatgtcctct
901 atatccaggt gggagatcca aaagtagatc atccatgctg ggagagacca gaggatatga
961 aagagaagag accacttact aaaattgatg tagatactcc agggacagag gttgctgctg
1021 aaactgctgc agctatggct tcagcgtctt tggtgtttaa ggatagtgat cctacatatt
1081 cagcaacgct tctgaaacat gcgaagcagt tgtttaattt tgcagataca aagagaggct
1141 cttacagtgt taacatacct gaggttcaga agttttacaa ttcgactgga tatggtgatg
1201 agctactatg ggcagctagt tggttgtatc atgcaacaga ggataaaact taccttgatt
1261 atgtgtctaa tcatggaaaa gaatttgcta gttttggaaa tcctacttgg tttagttggg
1321 acaacaagct tgcaggaaca caggtactat tatcaagatt actcttcttt aagaaagatt
1381 tatcaggaag caagggactt ggaaattaca ggaacacagc taaagctgtc atgtgtggac
1441 ttctaccaaa gtctccaaca tctacagcta gtagaacaaa cggtggtctt atatgggtta
1501 gtgaatggaa ctcgatgcaa caatccgttt cgtcagcgtt tttagcctcg cttttcagtg
1561 attacatgct cacttcccgt atccataaaa tatcttgcga cgggaaaatc ttcaaagcaa
1621 cagagcttag agatttcgcc aaatcgcagg ctgattacat gctggggaag aatccgttgg
1681 gaacgagctt cgtggtgggt tatggagaca aatacccaca atttgtgcat catagaggag
1741 cttcgatccc ggcagatgca acaacgggtt gcttagatgg attcaaatgg tttaactcga
1801 cgaaaccaaa cccaaacata gcatatggtg cactcgtagg tggacctttc ttcaatgaga
1861 cgttcactga ctcacgagag aacccaatgc agaacgagcc aaccacttac aacaatgcac
1921 tcctcgttgg tctcttgtct agtcttgtca ctacatcttc tactttacag tcgttgaagt
1981 gagctttgcg tgttttagcc ttcttattga aaatcacatt gcttcatttt tatttgtaat
2041 tttttaaaaa aaatcgtggg tgtgtgtgta ttcacgttgt gtattgcttg atatgttgat
2101 gcgtgtaacc aaacaattag ttgctctacg aatccaaaat tgagg
//