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    PIRL4 plant intracellular ras group-related LRR 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829699, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PIRL4
    Official Full Name
    plant intracellular ras group-related LRR 4
    Primary source
    TAIR:AT4G35470
    Locus tag
    AT4G35470
    See related
    Araport:AT4G35470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15J1.40; F15J1_40; plant intracellular ras group-related LRR 4
    Summary
    Encodes PIRL4, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.
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    Genomic context

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    See PIRL4 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (16846138..16849183)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ankyrin repeat-containing protein 2 Neighboring gene NADPH-dependent thioredoxin reductase B Neighboring gene uncharacterized protein Neighboring gene RING-H2 finger A3B Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
    2. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
    3. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
    4. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001342351.1
    NM_119712.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    plant intracellular ras group-related LRR 4
    NP_195272.1
    • plant intracellular ras group-related LRR 4 (PIRL4); INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 5 (TAIR:AT2G17440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16846138..16849183
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119712.6 → NP_195272.1  plant intracellular ras group-related LRR 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195272.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SVW8
      UniProtKB/TrEMBL
      A0A178UV21, A0A5S9XYV0, A0A654FVQ8
      Conserved Domains (2) summary
      COG4886
      Location:194 → 471
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:271 → 293
      LRR_RI; leucine-rich repeat [structural motif]

    2. NM_001342351.1 → NP_001329708.1  plant intracellular ras group-related LRR 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B8I3, A0A654FVQ8
      Conserved Domains (2) summary
      COG4886
      Location:194 → 471
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:271 → 293
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SVW8.1

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