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    Vacuolar calcium-binding protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842545, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Vacuolar calcium-binding protein-like protein
    Primary source
    TAIR:AT1G62480
    Locus tag
    AT1G62480
    See related
    Araport:AT1G62480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T3P18.4; T3P18_4
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (23128651..23129759)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Immunoglobulin E-set superfamily protein Neighboring gene pseudo Neighboring gene Mitochondrial transcription termination factor family protein Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptional Induction of Two Genes for CCaPs, Novel Cytosolic Proteins, in Arabidopsis thaliana in the Dark. Ide Y, et al. Plant Cell Physiol, 2007 Jan. PMID 17145720
    2. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    3. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CCaP1 functions as a mediator in response to continuous dark or gibberellic acid. [CCaP1]
      Title: Transcriptional Induction of Two Genes for CCaPs, Novel Cytosolic Proteins, in Arabidopsis thaliana in the Dark.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_104927.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_positive_effect cellular response to gibberellin stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_positive_effect cellular response to sucrose starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_positive_effect response to absence of light IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_negative_effect response to calcium ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_negative_effect response to light stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_positive_effect response to mannitol IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_negative_effect response to metal ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_positive_effect response to salt IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_positive_effect response to sorbitol IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_negative_effect response to sucrose IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Vacuolar calcium-binding protein-like protein
    NP_564795.1
    • Vacuolar calcium-binding protein-related; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 21787 Blast hits to 9668 proteins in 1087 species: Archae - 111; Bacteria - 3941; Metazoa - 6730; Fungi - 2179; Plants - 741; Viruses - 179; Other Eukaryotes - 7906 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      23128651..23129759
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104927.3 → NP_564795.1  Vacuolar calcium-binding protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564795.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0Z2B3, Q8LBZ8, Q9SXE9
      Conserved Domains (1) summary
      PRK10811
      Location:5 → 150
      rne; ribonuclease E; Reviewed
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SXE9.1

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