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    RPP27 resistance to peronospora parasitica protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841889, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RPP27
    Official Full Name
    resistance to peronospora parasitica protein
    Primary source
    TAIR:AT1G54470
    Locus tag
    AT1G54470
    See related
    Araport:AT1G54470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20D21.44; F20D21_44; resistance to Peronospora parasitica 27
    Summary
    Encodes a Cf-like gene in Arabidopsis that confers downy mildew resistance to several isolates of Peronospora parasitica.
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    Genomic context

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    See RPP27 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (20344698..20348097)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Calcium-binding EF-hand family protein Neighboring gene TPX2 (targeting protein for Xklp2) protein family Neighboring gene LRR receptor-like Serine/Threonine-kinase Neighboring gene exoribonuclease 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_104325.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    resistance to peronospora parasitica protein
    NP_175849.2
    • resistance to Peronospora parasitica 27 (RPP27); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 14 (TAIR:AT1G74180.1); Has 60601 Blast hits to 25411 proteins in 1007 species: Archae - 24; Bacteria - 5968; Metazoa - 12526; Fungi - 867; Plants - 37950; Viruses - 57; Other Eukaryotes - 3209 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20344698..20348097
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104325.3 → NP_175849.2  resistance to peronospora parasitica protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175849.2

      Status: REVIEWED

      Conserved Domains (4) summary
      cd00116
      Location:211 → 367
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:235 → 259
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:130 → 174
      LRRNT_2; Leucine rich repeat N-terminal domain
      pfam13855
      Location:258 → 316
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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