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    DUF7 agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 7) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825403, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DUF7
    Official Full Name
    agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 7)
    Primary source
    TAIR:AT3G62300
    Locus tag
    AT3G62300
    See related
    Araport:AT3G62300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATDUF7; DOMAIN OF UNKNOWN FUNCTION 724 7
    Summary
    Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype
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    Genomic context

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    See DUF7 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (23054004..23057283)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene tRNA-Phe Neighboring gene ADP-ribosylation factor A1E Neighboring gene RNA helicase family protein Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene Zinc knuckle (CCHC-type) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AIP1 is a novel Agenet/Tudor domain protein from Arabidopsis that interacts with regulators of DNA replication, transcription and chromatin remodeling. Brasil JN, et al. BMC Plant Biol, 2015 Nov 4. PMID 26538092, Free PMC Article
    2. Characterization of DUF724 gene family in Arabidopsis thaliana. Cao X, et al. Plant Mol Biol, 2010 Jan. PMID 19795213
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_116095.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 7)
    NP_001190163.1
    • DOMAIN OF UNKNOWN FUNCTION 724 7 (DUF7); FUNCTIONS IN: RNA binding; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Agenet (InterPro:IPR008395), Tudor-like, plant (InterPro:IPR014002), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1).
    NP_191789.2
    • DOMAIN OF UNKNOWN FUNCTION 724 7 (DUF7); FUNCTIONS IN: RNA binding; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1); Has 299 Blast hits to 227 proteins in 36 species: Archae - 0; Bacteria - 4; Metazoa - 29; Fungi - 0; Plants - 252; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      23054004..23057283
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203234.2 → NP_001190163.1  agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 7) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190163.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XN38, A0A654FK08, F4IY86
      Conserved Domains (4) summary
      smart00743
      Location:159 → 226
      Agenet; Tudor-like domain present in plant sequences
      pfam05266
      Location:541 → 721
      DUF724; Protein of unknown function (DUF724)
      cd20406
      Location:93 → 139
      Tudor_Agenet_AtDUF_rpt2_4; second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs)
      cl02573
      Location:14 → 78
      Tudor_SF; Tudor domain superfamily

    2. NM_116095.3 → NP_191789.2  agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 7) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191789.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DHM6, Q8H0V4, Q9M1P4
      UniProtKB/TrEMBL
      A0A178V889, A0A5S9XN38, A0A7G2ETH2
      Conserved Domains (4) summary
      smart00743
      Location:159 → 226
      Agenet; Tudor-like domain present in plant sequences
      pfam05266
      Location:540 → 720
      DUF724; Protein of unknown function (DUF724)
      cd20406
      Location:93 → 139
      Tudor_Agenet_AtDUF_rpt2_4; second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs)
      cl02573
      Location:14 → 78
      Tudor_SF; Tudor domain superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H0V4.1

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