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    CKB3 casein kinase II beta chain 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825196, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CKB3
    Official Full Name
    casein kinase II beta chain 3
    Primary source
    TAIR:AT3G60250
    Locus tag
    AT3G60250
    See related
    Araport:AT3G60250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    casein kinase II beta chain 3; casein kinase II beta chain 3
    Summary
    Regulatory (beta) subunit of the protein kinase CK2. Involved in regulation of the circadian clock in Arabidopsis
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    Genomic context

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    See CKB3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (22270270..22272173, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4G Neighboring gene Zinc-binding ribosomal protein family protein Neighboring gene ELMO/CED-12 family protein Neighboring gene Cupredoxin superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CK2 phosphorylation of CCA1 is necessary for its circadian oscillator function in Arabidopsis. Daniel X, et al. Proc Natl Acad Sci U S A, 2004 Mar 2. PMID 14978263, Free PMC Article
    2. The protein kinase CK2 is involved in regulation of circadian rhythms in Arabidopsis. Sugano S, et al. Proc Natl Acad Sci U S A, 1999 Oct 26. PMID 10535927, Free PMC Article
    3. Protein kinase CK2 interacts with and phosphorylates the Arabidopsis circadian clock-associated 1 protein. Sugano S, et al. Proc Natl Acad Sci U S A, 1998 Sep 1. PMID 9724822, Free PMC Article
    4. Phosphorylation by CK2 enhances the rapid light-induced degradation of phytochrome interacting factor 1 in Arabidopsis. Bu Q, et al. J Biol Chem, 2011 Apr 8. PMID 21330376, Free PMC Article
    5. An extensive survey of CK2 alpha and beta subunits in Arabidopsis: multiple isoforms exhibit differential subcellular localization. Salinas P, et al. Plant Cell Physiol, 2006 Sep. PMID 16926165

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data show that each of four beta subunits of CK2 strongly stimulated phosphorylation of phytochrome interacting factors by alpha1 or alpha2.
      Title: Phosphorylation by CK2 enhances the rapid light-induced degradation of phytochrome interacting factor 1 in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001125389.2
    NM_001340030.1
    NM_115889.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein kinase regulator activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein kinase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription factor binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of circadian rhythm IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of protein kinase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of protein kinase CK2 complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    casein kinase II beta chain 3
    NP_001118861.1
    • casein kinase II beta chain 3 (CKB3); CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: casein kinase II beta subunit 4 (TAIR:AT2G44680.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_191584.1
    • casein kinase II beta chain 3 (CKB3); CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: casein kinase II beta subunit 4 (TAIR:AT2G44680.1); Has 1086 Blast hits to 1084 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 424; Fungi - 285; Plants - 156; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22270270..22272173 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001125389.2 → NP_001118861.1  casein kinase II beta chain 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118861.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VGJ0, A0A384KW71, A0A7G2EVI7, B3H4P8
      Conserved Domains (1) summary
      smart01085
      Location:89 → 271
      CK_II_beta; Casein kinase II regulatory subunit

    2. NM_115889.5 → NP_191584.1  casein kinase II beta chain 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191584.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81275, Q24JI1
      UniProtKB/TrEMBL
      A0A5S9XN65, A0A654FJH2, A0A7G2EU62
      Conserved Domains (1) summary
      pfam01214
      Location:89 → 272
      CK_II_beta; Casein kinase II regulatory subunit

    3. NM_001340030.1 → NP_001325549.1  casein kinase II beta chain 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLK5, A0A7G2EU62
      Conserved Domains (1) summary
      smart01085
      Location:89 → 235
      CK_II_beta; Casein kinase II regulatory subunit
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O81275.1

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