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Arabidopsis thaliana casein kinase II beta chain 3 (CKB3), mRNA

NCBI Reference Sequence: NM_001125389.2

FASTA Graphics 

LOCUS       NM_001125389            1483 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana casein kinase II beta chain 3 (CKB3), mRNA.
ACCESSION   NM_001125389
VERSION     NM_001125389.2
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1483)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 1483)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1483)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1483)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
            
            On Sep 12, 2016 this sequence version replaced NM_001125389.1.
FEATURES             Location/Qualifiers
     source          1..1483
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..1483
                     /gene="CKB3"
                     /locus_tag="AT3G60250"
                     /gene_synonym="casein kinase II beta chain 3; casein
                     kinase II beta chain 3"
                     /note="Regulatory (beta) subunit of the protein kinase
                     CK2. Involved in regulation of the circadian clock in
                     Arabidopsis"
                     /db_xref="Araport:AT3G60250"
                     /db_xref="GeneID:825196"
                     /db_xref="TAIR:AT3G60250"
     CDS             212..1039
                     /gene="CKB3"
                     /locus_tag="AT3G60250"
                     /gene_synonym="casein kinase II beta chain 3; casein
                     kinase II beta chain 3"
                     /inference="Similar to RNA sequence,
                     EST:INSD:DR257711.1,INSD:Z34789.1,INSD:EL135845.1,
                     INSD:AI993201.1,INSD:EL221047.1,INSD:EG529102.1,
                     INSD:ES113811.1,INSD:AV551311.1,INSD:T42848.1,
                     INSD:DR257720.1,INSD:ES078806.1,INSD:T45989.1,
                     INSD:BP613783.1,INSD:DR257715.1,INSD:DR257710.1,
                     INSD:EL068905.1,INSD:EH816564.1,INSD:ES000917.1,
                     INSD:EL246097.1,INSD:ES107793.1,INSD:T42705.1,
                     INSD:DR257716.1,INSD:EL130679.1,INSD:T45841.1,
                     INSD:AI099701.1,INSD:Z34116.1,INSD:BP838716.1,
                     INSD:DR257717.1,INSD:BP590520.1,INSD:DR257712.1,
                     INSD:DR257713.1,INSD:BP791356.1,INSD:ES093727.1,
                     INSD:BP844091.1,INSD:DR257714.1,INSD:AU237720.1,
                     INSD:EL186032.1,INSD:DR257718.1,INSD:AU228807.1,
                     INSD:EH797670.1,INSD:CB074493.1,INSD:DR257719.1,
                     INSD:ES148647.1"
                     /note="casein kinase II beta chain 3 (CKB3); CONTAINS
                     InterPro DOMAIN/s: Casein kinase II, regulatory subunit,
                     alpha-helical (InterPro:IPR016149), Casein kinase II,
                     regulatory subunit, beta-sheet (InterPro:IPR016150),
                     Casein kinase II, regulatory subunit (InterPro:IPR000704);
                     BEST Arabidopsis thaliana protein match is: casein kinase
                     II beta subunit 4 (TAIR:AT2G44680.2); Has 30201 Blast hits
                     to 17322 proteins in 780 species: Archae - 12; Bacteria -
                     1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
                     Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
                     BLink)."
                     /codon_start=1
                     /product="casein kinase II beta chain 3"
                     /protein_id="NP_001118861.1"
                     /db_xref="GeneID:825196"
                     /db_xref="TAIR:AT3G60250"
                     /db_xref="Araport:AT3G60250"
                     /translation="MYKERSGGGGGGSSRSEILGGAIDRKRINDALNKKLEKSSTSTT
                     TSRVFSSKDKDPFSFTSTKTQLPDVESETDSEGSDVSGSEGDDTSWISWFCNLRGNDF
                     FCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVDASNSEMFTDEQHEMVESAAEML
                     YGLIHVRYILTTKGMAAMTEKYKNCDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYC
                     PKCEDISYPRSKFQDIDGAYFGTTFPHLFLMTYGNLKPQKPTQSYVPKIFGFKVHKP"
ORIGIN      
        1 agagaccatc tttacatcgc ctatgtcctg tcctccactc tgttaccaaa attatatata
       61 atttttttaa aaaaattaaa attaaaaaga agaaaaccct agatttctcc gtctctctaa
      121 tttcctttct ctctcaagct tctcagaaag tctgacactt tcgagaatct aatctccaaa
      181 tttcttgtct ttttggagaa ggaatcgaat tatgtacaag gaacgtagtg gaggaggtgg
      241 tggtgggtca tcgagatcag agatcctcgg tggagctatt gatcggaaac gaatcaacga
      301 tgcactcaat aagaaactag agaaatcttc aacttccacc accacatcta gggttttctc
      361 ttctaaagac aaagatccct tttccttcac atctactaaa actcagcttc ctgatgtgga
      421 atcggaaact gatagtgaag ggtctgatgt gagtggatcg gagggtgatg atacgtcgtg
      481 gatctcttgg ttttgtaatt tgagagggaa tgatttcttc tgtgaagtcg atgaagatta
      541 tattcaagat gatttcaatc tttgtggttt aagtggtcaa gtcccttact atgattatgc
      601 acttgatctc attttagatg ttgatgcttc caacagtgag atgtttactg atgaacagca
      661 tgaaatggtg gaatcagctg ctgagatgct atatggtctt attcatgttc gttacatttt
      721 gactactaaa ggaatggctg caatgactga gaagtacaag aactgtgatt tcgggagatg
      781 cccgagagtt ttctgttgcg gtcagtcttg tcttccagtt ggacaatccg atatcccgag
      841 atcgagtact gtgaagatat actgccctaa atgcgaggat atatcttacc cgcgatctaa
      901 attccaagat attgatggag cgtactttgg aaccacattc cctcacttgt tcttgatgac
      961 ttacgggaac ttaaagccgc agaagcctac tcaaagctat gtcccaaaaa tctttggctt
     1021 caaggtacac aaaccatgat actagtgctc tgcattctca atggtgatac atttagtggc
     1081 tctgtaattg catccggatg agcaactgaa acgatagctg cggtgactgg agcatacatc
     1141 aaccattggg ttagaggatg agagctgaag ttgaaagatg gaatcttgaa agaatctcat
     1201 gaagttccaa gaaaacttag aagtgcaaca gcctggctca ttgggggaaa agaacgacac
     1261 acttgggtct tgttgttgtc tccgaaaaga ttttccccag ttagttggat tttgttttga
     1321 actgttggat tattattcgt ttttctaatt tcatgtaaaa ctcataaatt tcaactgaag
     1381 tataacttag atcaatcaat ttcatcaaag atcataatga gacatgtatg gccattaaaa
     1441 tacactcaag ggaccaatat cttaggatga ttacgacaca aaa
//
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