LOCUS NM_001125389 1483 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana casein kinase II beta chain 3 (CKB3), mRNA.
ACCESSION NM_001125389
VERSION NM_001125389.2
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1483)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 1483)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1483)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1483)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003074).
On Sep 12, 2016 this sequence version replaced NM_001125389.1.
FEATURES Location/Qualifiers
source 1..1483
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
gene 1..1483
/gene="CKB3"
/locus_tag="AT3G60250"
/gene_synonym="casein kinase II beta chain 3; casein
kinase II beta chain 3"
/note="Regulatory (beta) subunit of the protein kinase
CK2. Involved in regulation of the circadian clock in
Arabidopsis"
/db_xref="Araport:AT3G60250"
/db_xref="GeneID:825196"
/db_xref="TAIR:AT3G60250"
CDS 212..1039
/gene="CKB3"
/locus_tag="AT3G60250"
/gene_synonym="casein kinase II beta chain 3; casein
kinase II beta chain 3"
/inference="Similar to RNA sequence,
EST:INSD:DR257711.1,INSD:Z34789.1,INSD:EL135845.1,
INSD:AI993201.1,INSD:EL221047.1,INSD:EG529102.1,
INSD:ES113811.1,INSD:AV551311.1,INSD:T42848.1,
INSD:DR257720.1,INSD:ES078806.1,INSD:T45989.1,
INSD:BP613783.1,INSD:DR257715.1,INSD:DR257710.1,
INSD:EL068905.1,INSD:EH816564.1,INSD:ES000917.1,
INSD:EL246097.1,INSD:ES107793.1,INSD:T42705.1,
INSD:DR257716.1,INSD:EL130679.1,INSD:T45841.1,
INSD:AI099701.1,INSD:Z34116.1,INSD:BP838716.1,
INSD:DR257717.1,INSD:BP590520.1,INSD:DR257712.1,
INSD:DR257713.1,INSD:BP791356.1,INSD:ES093727.1,
INSD:BP844091.1,INSD:DR257714.1,INSD:AU237720.1,
INSD:EL186032.1,INSD:DR257718.1,INSD:AU228807.1,
INSD:EH797670.1,INSD:CB074493.1,INSD:DR257719.1,
INSD:ES148647.1"
/note="casein kinase II beta chain 3 (CKB3); CONTAINS
InterPro DOMAIN/s: Casein kinase II, regulatory subunit,
alpha-helical (InterPro:IPR016149), Casein kinase II,
regulatory subunit, beta-sheet (InterPro:IPR016150),
Casein kinase II, regulatory subunit (InterPro:IPR000704);
BEST Arabidopsis thaliana protein match is: casein kinase
II beta subunit 4 (TAIR:AT2G44680.2); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink)."
/codon_start=1
/product="casein kinase II beta chain 3"
/protein_id="NP_001118861.1"
/db_xref="GeneID:825196"
/db_xref="TAIR:AT3G60250"
/db_xref="Araport:AT3G60250"
/translation="MYKERSGGGGGGSSRSEILGGAIDRKRINDALNKKLEKSSTSTT
TSRVFSSKDKDPFSFTSTKTQLPDVESETDSEGSDVSGSEGDDTSWISWFCNLRGNDF
FCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVDASNSEMFTDEQHEMVESAAEML
YGLIHVRYILTTKGMAAMTEKYKNCDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYC
PKCEDISYPRSKFQDIDGAYFGTTFPHLFLMTYGNLKPQKPTQSYVPKIFGFKVHKP"
ORIGIN
1 agagaccatc tttacatcgc ctatgtcctg tcctccactc tgttaccaaa attatatata
61 atttttttaa aaaaattaaa attaaaaaga agaaaaccct agatttctcc gtctctctaa
121 tttcctttct ctctcaagct tctcagaaag tctgacactt tcgagaatct aatctccaaa
181 tttcttgtct ttttggagaa ggaatcgaat tatgtacaag gaacgtagtg gaggaggtgg
241 tggtgggtca tcgagatcag agatcctcgg tggagctatt gatcggaaac gaatcaacga
301 tgcactcaat aagaaactag agaaatcttc aacttccacc accacatcta gggttttctc
361 ttctaaagac aaagatccct tttccttcac atctactaaa actcagcttc ctgatgtgga
421 atcggaaact gatagtgaag ggtctgatgt gagtggatcg gagggtgatg atacgtcgtg
481 gatctcttgg ttttgtaatt tgagagggaa tgatttcttc tgtgaagtcg atgaagatta
541 tattcaagat gatttcaatc tttgtggttt aagtggtcaa gtcccttact atgattatgc
601 acttgatctc attttagatg ttgatgcttc caacagtgag atgtttactg atgaacagca
661 tgaaatggtg gaatcagctg ctgagatgct atatggtctt attcatgttc gttacatttt
721 gactactaaa ggaatggctg caatgactga gaagtacaag aactgtgatt tcgggagatg
781 cccgagagtt ttctgttgcg gtcagtcttg tcttccagtt ggacaatccg atatcccgag
841 atcgagtact gtgaagatat actgccctaa atgcgaggat atatcttacc cgcgatctaa
901 attccaagat attgatggag cgtactttgg aaccacattc cctcacttgt tcttgatgac
961 ttacgggaac ttaaagccgc agaagcctac tcaaagctat gtcccaaaaa tctttggctt
1021 caaggtacac aaaccatgat actagtgctc tgcattctca atggtgatac atttagtggc
1081 tctgtaattg catccggatg agcaactgaa acgatagctg cggtgactgg agcatacatc
1141 aaccattggg ttagaggatg agagctgaag ttgaaagatg gaatcttgaa agaatctcat
1201 gaagttccaa gaaaacttag aagtgcaaca gcctggctca ttgggggaaa agaacgacac
1261 acttgggtct tgttgttgtc tccgaaaaga ttttccccag ttagttggat tttgttttga
1321 actgttggat tattattcgt ttttctaatt tcatgtaaaa ctcataaatt tcaactgaag
1381 tataacttag atcaatcaat ttcatcaaag atcataatga gacatgtatg gccattaaaa
1441 tacactcaag ggaccaatat cttaggatga ttacgacaca aaa
//