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    LOW protein: PPR containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824483, updated on 18-Sep-2024

    Summary

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    Official Full Name
    LOW protein: PPR containing protein
    Primary source
    TAIR:AT3G53170
    Locus tag
    AT3G53170
    See related
    Araport:AT3G53170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (19704106..19706536, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene UDP-glucosyl transferase 73C7 Neighboring gene nodulin/glutamine synthase-like protein Neighboring gene Pectin lyase-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article
    2. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001339595.1
    NM_001339598.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleolus HDA PubMed 

    General protein information

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    Preferred Names
    LOW protein: PPR containing protein
    NP_001319735.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glutamine biosynthetic process; LOCATED IN: nucleolus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G48730.1); Has 41000 Blast hits to 13619 proteins in 279 species: Archae - 1; Bacteria - 35; Metazoa - 326; Fungi - 348; Plants - 39122; Viruses - 0; Other Eukaryotes - 1168 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19704106..19706536 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339596.1 → NP_001326325.1  LOW protein: PPR containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LNX7
      Conserved Domains (2) summary
      PLN03218
      Location:141 → 492
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:181 → 209
      PPR; PPR repeat [structural motif]

    2. NM_001339597.1 → NP_001326326.1  LOW protein: PPR containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LNX8

    3. NM_001339595.1 → NP_001319735.1  LOW protein: PPR containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LNX7
      Conserved Domains (2) summary
      PLN03218
      Location:141 → 492
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:181 → 209
      PPR; PPR repeat [structural motif]

    4. NM_001339598.1 → NP_001326327.1  LOW protein: PPR containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J999, Q9SCP4
      UniProtKB/TrEMBL
      A0A178V5V3
      Conserved Domains (5) summary
      TIGR00756
      Location:201 → 230
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:131 → 159
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:161 → 192
      PPR_1; PPR repeat
      pfam13041
      Location:305 → 353
      PPR_2; PPR repeat family
      pfam13812
      Location:306 → 339
      PPR_3; Pentatricopeptide repeat domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SCP4.1

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