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Conserved domains on  [gi|1063716477|ref|NP_001326327|]
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LOW protein: PPR containing protein [Arabidopsis thaliana]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000098)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 91-441 5.73e-20

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 93.02  E-value: 5.73e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477   91 EPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMkSVSDCKPDVFTFTV 170
Cdd:PLN03218   434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM-VNAGVEANVHTFGA 512

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477  171 LISCCCKLGRfdLVKS-----IvleMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADM-IEDGDSLPDVCTLNSIIG 244
Cdd:PLN03218   513 LIDGCARAGQ--VAKAfgaygI---MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMkAETHPIDPDHITVGALMK 587

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477  245 SYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEK 324
Cdd:PLN03218   588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477  325 MDDVFRKMKYQGVKPNSITYCSLVNAYSKAG-------LVVKIDSV-LRQIVNSdvvldtpfFNCIINAYGQAGDLATMK 396
Cdd:PLN03218   668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKnwkkaleLYEDIKSIkLRPTVST--------MNALITALCEGNQLPKAL 739

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*
gi 1063716477  397 ELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMISSG 441
Cdd:PLN03218   740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 91-441 5.73e-20

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 93.02  E-value: 5.73e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477   91 EPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMkSVSDCKPDVFTFTV 170
Cdd:PLN03218   434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM-VNAGVEANVHTFGA 512

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477  171 LISCCCKLGRfdLVKS-----IvleMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADM-IEDGDSLPDVCTLNSIIG 244
Cdd:PLN03218   513 LIDGCARAGQ--VAKAfgaygI---MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMkAETHPIDPDHITVGALMK 587

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477  245 SYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEK 324
Cdd:PLN03218   588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477  325 MDDVFRKMKYQGVKPNSITYCSLVNAYSKAG-------LVVKIDSV-LRQIVNSdvvldtpfFNCIINAYGQAGDLATMK 396
Cdd:PLN03218   668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKnwkkaleLYEDIKSIkLRPTVST--------MNALITALCEGNQLPKAL 739

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*
gi 1063716477  397 ELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMISSG 441
Cdd:PLN03218   740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 305-353 2.69e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 58.14  E-value: 2.69e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1063716477 305 TTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSK 353
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 201-230 5.59e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 45.52  E-value: 5.59e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 1063716477 201 VTYNTIIDGYGKAGMFEEMESVLADMIEDG 230
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 91-441 5.73e-20

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 93.02  E-value: 5.73e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477   91 EPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMkSVSDCKPDVFTFTV 170
Cdd:PLN03218   434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM-VNAGVEANVHTFGA 512

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477  171 LISCCCKLGRfdLVKS-----IvleMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADM-IEDGDSLPDVCTLNSIIG 244
Cdd:PLN03218   513 LIDGCARAGQ--VAKAfgaygI---MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMkAETHPIDPDHITVGALMK 587

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477  245 SYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEK 324
Cdd:PLN03218   588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477  325 MDDVFRKMKYQGVKPNSITYCSLVNAYSKAG-------LVVKIDSV-LRQIVNSdvvldtpfFNCIINAYGQAGDLATMK 396
Cdd:PLN03218   668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKnwkkaleLYEDIKSIkLRPTVST--------MNALITALCEGNQLPKAL 739

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*
gi 1063716477  397 ELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMISSG 441
Cdd:PLN03218   740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 91-369 1.37e-19

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 91.86  E-value: 1.37e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477   91 EPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSD-CKPDVFTFT 169
Cdd:PLN03218   504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHpIDPDHITVG 583

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477  170 VLISCCCKLGRFDLVK-----------------------------------SIVLEMSYLGVGCSTVTYNTIIDGYGKAG 214
Cdd:PLN03218   584 ALMKACANAGQVDRAKevyqmiheynikgtpevytiavnscsqkgdwdfalSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477  215 MFEEMESVLADMIEDGDSLPDVcTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVM 294
Cdd:PLN03218   664 DLDKAFEILQDARKQGIKLGTV-SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477  295 DFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLV--------NAYSKAGLVVKIDSVLRQ 366
Cdd:PLN03218   743 SEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITglclrrfeKACALGEPVVSFDSGRPQ 822


                   ...
gi 1063716477  367 IVN 369
Cdd:PLN03218   823 IEN 825
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 125-392 1.82e-19

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 91.48  E-value: 1.82e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477  125 LKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSvSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYN 204
Cdd:PLN03218   433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQE-AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477  205 TIIDGYGKAGMfeemesvladmiedgdslpdvctLNSIIGSYGNGRNMRkmeswysrfqlmgVQPDITTFNILILSFGKA 284
Cdd:PLN03218   512 ALIDGCARAGQ-----------------------VAKAFGAYGIMRSKN-------------VKPDRVVFNALISACGQS 555

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477  285 GMYKKMCSVMDFM--EKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDS 362
Cdd:PLN03218   556 GAVDRAFDVLAEMkaETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635

                          250       260       270
                   ....*....|....*....|....*....|
gi 1063716477  363 VLRQIVNSDVVLDTPFFNCIINAYGQAGDL 392
Cdd:PLN03218   636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665
PLN03077 PLN03077
Protein ECB2; Provisional
 113-445 4.35e-13

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 71.42  E-value: 4.35e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477 113 ASLLFEVMlseglkPTIDV--YTSLISVYGKSELLDKAFSTLEYMKSVSdCKPDVFTFTVLISCCCKLGRFDLVKSIVLE 190
Cdd:PLN03077  241 ARLVFDRM------PRRDCisWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHGY 313

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477 191 MSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMiedgdSLPDVCTLNSIIGSY-GNGRNMRKMESwYSRFQLMGVQP 269
Cdd:PLN03077  314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM-----ETKDAVSWTAMISGYeKNGLPDKALET-YALMEQDNVSP 387

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477 270 DITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVF-------------------- 329
Cdd:PLN03077  388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFhnipekdviswtsiiaglrl 467

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477 330 -----------RKMKYQgVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGdlaTMKEL 398
Cdd:PLN03077  468 nnrcfealiffRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG---RMNYA 543

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1063716477 399 YIQMEerKCKPDKITFATMIKTYTAHGIFDAVQELEKQMISSGENLD 445
Cdd:PLN03077  544 WNQFN--SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 261-437 5.46e-13

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 71.06  E-value: 5.46e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477  261 RFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPN 340
Cdd:PLN03218   427 RFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN 506

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477  341 SITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGD-------LATMKElyiqmEERKCKPDKIT 413
Cdd:PLN03218   507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAvdrafdvLAEMKA-----ETHPIDPDHIT 581

                          170       180
                   ....*....|....*....|....
gi 1063716477  414 FATMIKTYTAHGIFDAVQELEKQM 437
Cdd:PLN03218   582 VGALMKACANAGQVDRAKEVYQMI 605
PLN03077 PLN03077
Protein ECB2; Provisional
 94-410 1.64e-12

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 69.49  E-value: 1.64e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477  94 CKTYTKLFKVLGNCKQpdqASLLFEVMlseglkPTIDV--YTSLISVYGKSELLDKAFSTLEYMKsVSDCKPDVFTFTVL 171
Cdd:PLN03077  326 CNSLIQMYLSLGSWGE---AEKVFSRM------ETKDAvsWTAMISGYEKNGLPDKALETYALME-QDNVSPDEITIASV 395

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477 172 ISCCCKLGRFDlvKSIVLE--------MSYLgvgcstVTYNTIIDGYGKAGMFEEMESVLADMIEDgdslpDVCTLNSII 243
Cdd:PLN03077  396 LSACACLGDLD--VGVKLHelaerkglISYV------VVANALIEMYSKCKCIDKALEVFHNIPEK-----DVISWTSII 462

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477 244 GsyGNGRNMRKMES-WYSRFQLMGVQPDITTF--------NILILSFGK--------AG-------------MYKKmCSV 293
Cdd:PLN03077  463 A--GLRLNNRCFEAlIFFRQMLLTLKPNSVTLiaalsacaRIGALMCGKeihahvlrTGigfdgflpnalldLYVR-CGR 539

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477 294 MDFMEKRFFSLT--TVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVK-IDSVLRQIVNS 370
Cdd:PLN03077  540 MNYAWNQFNSHEkdVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQgLEYFHSMEEKY 619

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1063716477 371 DVVLDTPFFNCIINAYGQAGDLatmKELYIQMEERKCKPD 410
Cdd:PLN03077  620 SITPNLKHYACVVDLLGRAGKL---TEAYNFINKMPITPD 656
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 71-428 3.31e-12

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 68.36  E-value: 3.31e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477  71 ENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKA-- 148
Cdd:PLN03081  100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDArr 179

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477 149 --------------------------FSTLEYMKSV----SDCKPDvfTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGC 198
Cdd:PLN03081  180 lfdempernlaswgtiigglvdagnyREAFALFREMwedgSDAEPR--TFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477 199 STVTYNTIIDGYGKAGMFEEMESVLadmiedgDSLPDVCTL--NSIIGSYG-NGRNMRKMESWYSrFQLMGVQPDITTFN 275
Cdd:PLN03081  258 DTFVSCALIDMYSKCGDIEDARCVF-------DGMPEKTTVawNSMLAGYAlHGYSEEALCLYYE-MRDSGVSIDQFTFS 329

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477 276 ILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQgvkpNSITYCSLVNAYSKAG 355
Cdd:PLN03081  330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHG 405

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1063716477 356 LVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQM-EERKCKPDKITFATMIKTYTAHGIFD 428
Cdd:PLN03081  406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMsENHRIKPRAMHYACMIELLGREGLLD 479
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 305-353 2.69e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 58.14  E-value: 2.69e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1063716477 305 TTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSK 353
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 127-177 1.76e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.83  E-value: 1.76e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1063716477 127 PTIDVYTSLISVYGKSELLDKAFSTLEYMKSvSDCKPDVFTFTVLISCCCK 177
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKK-RGVKPNVYTYTILINGLCK 50
PLN03077 PLN03077
Protein ECB2; Provisional
 202-437 7.91e-10

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 61.02  E-value: 7.91e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477 202 TYNTIIDGYGKAGMFEEMESVLADMIEDGDSlPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSF 281
Cdd:PLN03077  154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVR-PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477 282 GKAGMYKKMCSVMDFMEKRffslTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKID 361
Cdd:PLN03077  233 VKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1063716477 362 SVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERkckpDKITFATMIKTYTAHGIFDAVQELEKQM 437
Cdd:PLN03077  309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALM 380
PLN03077 PLN03077
Protein ECB2; Provisional
 135-357 6.68e-09

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 58.32  E-value: 6.68e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477 135 LISVYGKSELLDKAFSTLEYMKSVSdCKPDVFTF-TVLISCC----CKLGR----------FDLVKSIVLEMSYLGVGCS 199
Cdd:PLN03077  158 LVGGYAKAGYFDEALCLYHRMLWAG-VRPDVYTFpCVLRTCGgipdLARGRevhahvvrfgFELDVDVVNALITMYVKCG 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477 200 TV----------------TYNTIIDGYGKAGMFEEMESVLADMIEDgDSLPDVCTLNSII---GSYGNGRNMRKMESWYS 260
Cdd:PLN03077  237 DVvsarlvfdrmprrdciSWNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVIsacELLGDERLGREMHGYVV 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477 261 RfqlMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRffslTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPN 340
Cdd:PLN03077  316 K---TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388

                         250
                  ....*....|....*..
gi 1063716477 341 SITYCSLVNAYSKAGLV 357
Cdd:PLN03077  389 EITIASVLSACACLGDL 405
PLN03077 PLN03077
Protein ECB2; Provisional
 111-350 1.17e-08

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 57.55  E-value: 1.17e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477 111 DQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKA----------------------------FSTLEYMKS-VSDC 161
Cdd:PLN03077  406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAlevfhnipekdviswtsiiaglrlnnrcFEALIFFRQmLLTL 485

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477 162 KPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGmfeEMESVLADMiedGDSLPDVCTLNS 241
Cdd:PLN03077  486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG---RMNYAWNQF---NSHEKDVVSWNI 559

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477 242 IIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVT-YNIVIETFGKAG 320
Cdd:PLN03077  560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKhYACVVDLLGRAG 639

                         250       260       270
                  ....*....|....*....|....*....|
gi 1063716477 321 RIEKMDDVFRKMKyqgVKPNSITYCSLVNA 350
Cdd:PLN03077  640 KLTEAYNFINKMP---ITPDPAVWGALLNA 666
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 163-212 4.66e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 49.28  E-value: 4.66e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063716477 163 PDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGK 212
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 266-447 3.64e-07

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 52.57  E-value: 3.64e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477 266 GVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRffslTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITY- 344
Cdd:PLN03081  153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFv 228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477 345 ----------------------------------CSLVNAYSKAGLVVKIDSVLRQIVNSDVVLdtpfFNCIINAYGQAG 390
Cdd:PLN03081  229 vmlrasaglgsaragqqlhccvlktgvvgdtfvsCALIDMYSKCGDIEDARCVFDGMPEKTTVA----WNSMLAGYALHG 304

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1063716477 391 DLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMISSGENLDIL 447
Cdd:PLN03081  305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 379-421 4.22e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 46.59  E-value: 4.22e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1063716477 379 FNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTY 421
Cdd:pfam13041   6 YNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 199-248 5.50e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 46.20  E-value: 5.50e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063716477 199 STVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSlPDVCTLNSIIGSYGN 248
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVK-PNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 201-230 5.59e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 45.52  E-value: 5.59e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 1063716477 201 VTYNTIIDGYGKAGMFEEMESVLADMIEDG 230
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 201-230 1.60e-06

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 44.38  E-value: 1.60e-06
                          10        20        30
                  ....*....|....*....|....*....|
gi 1063716477 201 VTYNTIIDGYGKAGMFEEMESVLADMIEDG 230
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKG 30
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 269-318 1.64e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 44.66  E-value: 1.64e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063716477 269 PDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGK 318
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 307-341 3.49e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.60  E-value: 3.49e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1063716477 307 VTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNS 341
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 115-175 1.42e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 42.73  E-value: 1.42e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063716477 115 LLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSdCKPDVFTFTVLISCC 175
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKG-IKPTLDTYNAILGVI 60
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 186-248 1.47e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 42.35  E-value: 1.47e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063716477 186 SIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSlPDVCTLNSIIGSYGN 248
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIK-PTLDTYNAILGVIGG 62
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 379-410 8.82e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 39.36  E-value: 8.82e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1063716477 379 FNCIINAYGQAGDLATMKELYIQMEERKCKPD 410
Cdd:TIGR00756   3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 292-353 1.02e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 40.03  E-value: 1.02e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1063716477 292 SVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSK 353
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 362-421 1.64e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 39.65  E-value: 1.64e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477 362 SVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTY 421
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PLN03077 PLN03077
Protein ECB2; Provisional
 298-433 2.65e-04

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 43.30  E-value: 2.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716477 298 EKRFFSlttvtYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTP 377
Cdd:PLN03077  149 ERDLFS-----WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD 223

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1063716477 378 FFNCIINAYGQAGDLATMKELYIQMEERkckpDKITFATMIKTYTAHGIFDAVQEL 433
Cdd:PLN03077  224 VVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLEL 275
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 161-182 3.25e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 37.71  E-value: 3.25e-04
                          10        20
                  ....*....|....*....|..
gi 1063716477 161 CKPDVFTFTVLISCCCKLGRFD 182
Cdd:pfam12854   3 LKPDVVTYNTLINGLCRAGRVD 24
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 307-337 4.68e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.44  E-value: 4.68e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1063716477 307 VTYNIVIETFGKAGRIEKMDDVFRKMKYQGV 337
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 197-220 5.37e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 37.33  E-value: 5.37e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1063716477 197 GCS--TVTYNTIIDGYGKAG-------MFEEME 220
Cdd:pfam12854   2 GLKpdVVTYNTLINGLCRAGrvdeafeLLDEME 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 96-141 6.90e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 37.34  E-value: 6.90e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1063716477  96 TYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGK 141
Cdd:pfam13041   5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 91-141 9.29e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 37.34  E-value: 9.29e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1063716477  91 EPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGK 141
Cdd:pfam13812  12 QLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 266-318 2.14e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 36.57  E-value: 2.14e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1063716477 266 GVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGK 318
Cdd:pfam13812  10 GIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 302-333 3.95e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 34.63  E-value: 3.95e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1063716477 302 FSLTTVTYNIVIETFGKAGRIEKMDDVFRKMK 333
Cdd:pfam12854   3 LKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 265-298 3.99e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 34.63  E-value: 3.99e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1063716477 265 MGVQPDITTFNILILSFGKAGMYKKMCSVMDFME 298
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 123-156 4.07e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 34.63  E-value: 4.07e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1063716477 123 EGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMK 156
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 166-196 5.58e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 34.36  E-value: 5.58e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1063716477 166 FTFTVLISCCCKLGRFDLVKSIVLEMSYLGV 196
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 166-191 7.59e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 33.97  E-value: 7.59e-03
                          10        20
                  ....*....|....*....|....*.
gi 1063716477 166 FTFTVLISCCCKLGRFDLVKSIVLEM 191
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEM 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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