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    MYB100 myb domain protein 100 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817061, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MYB100
    Official Full Name
    myb domain protein 100
    Primary source
    TAIR:AT2G25230
    Locus tag
    AT2G25230
    See related
    Araport:AT2G25230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtMYB100; myb domain protein 100; T22F11.18; T22F11_18
    Summary
    Encodes a putative transcription factor (MYB100).
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    Genomic context

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    See MYB100 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (10747211..10748467, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Protein kinase superfamily protein Neighboring gene Serine protease inhibitor (SERPIN) family protein Neighboring gene serine/arginine repetitive matrix-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myb domain protein 100
    NP_180095.1
    • myb domain protein 100 (MYB100); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 22 (TAIR:AT5G40430.1); Has 8885 Blast hits to 7956 proteins in 557 species: Archae - 0; Bacteria - 3; Metazoa - 867; Fungi - 587; Plants - 5399; Viruses - 3; Other Eukaryotes - 2026 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10747211..10748467 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128080.1 → NP_180095.1  myb domain protein 100 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180095.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9S754
      Conserved Domains (3) summary
      smart00717
      Location:78 → 125
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      pfam00249
      Location:78 → 123
      Myb_DNA-binding; Myb-like DNA-binding domain
      pfam13921
      Location:29 → 89
      Myb_DNA-bind_6; Myb-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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