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Conserved domains on  [gi|15224693|ref|NP_180095|]
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myb domain protein 100 [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 21-198 4.04e-24

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 99.67  E-value: 4.04e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15224693   21 KSDIDKVNWTESEDIKLKEIMALGPKNKWTKVAKKFE-GRTGKQCRERWYNHARPNIKKTAWSEEEDQILIEAHKVLGTK 99
Cdd:PLN03091   9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGlQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15224693  100 WVEIAQQLPGRSDNNIKNHWNTTKRRVQNKRGgtVNPVGNNILENYircitinnedflkTDGSYGEPTNIESDDDSKDML 179
Cdd:PLN03091  89 WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG--IDPNTHKPLSEV-------------ENGEDKNPPTDDKSDKASSVV 153

                        170
                 ....*....|....*....
gi 15224693  180 YGEMNLsletITTQTTKPL 198
Cdd:PLN03091 154 SNELNL----LKADNSKPL 168
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 21-198 4.04e-24

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 99.67  E-value: 4.04e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15224693   21 KSDIDKVNWTESEDIKLKEIMALGPKNKWTKVAKKFE-GRTGKQCRERWYNHARPNIKKTAWSEEEDQILIEAHKVLGTK 99
Cdd:PLN03091   9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGlQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15224693  100 WVEIAQQLPGRSDNNIKNHWNTTKRRVQNKRGgtVNPVGNNILENYircitinnedflkTDGSYGEPTNIESDDDSKDML 179
Cdd:PLN03091  89 WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG--IDPNTHKPLSEV-------------ENGEDKNPPTDDKSDKASSVV 153

                        170
                 ....*....|....*....
gi 15224693  180 YGEMNLsletITTQTTKPL 198
Cdd:PLN03091 154 SNELNL----LKADNSKPL 168
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 14-125 3.65e-20

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 88.31  E-value: 3.65e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15224693  14 STSKYLKKSDIDKVNWTESED-IKLKEIMALGPkNKWTKVAKKFEGRTGKQCRERWYNHARPNIKKTAWSEEEDQILIEA 92
Cdd:COG5147   8 ELQIKLMQTKRKGGSWKRTEDeDLKALVKKLGP-NNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDL 86

                        90       100       110
                ....*....|....*....|....*....|...
gi 15224693  93 HKVLGTKWVEIAQQLPGRSDNNIKNHWNTTKRR 125
Cdd:COG5147  87 DKELGTQWSTIADYKDRRTAQQCVERYVNTLED 119
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 78-123 2.57e-14

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 64.83  E-value: 2.57e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15224693    78 KTAWSEEEDQILIEAHKVLGTKWVEIAQQLPGRSDNNIKNHWNTTK 123
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
78-125 2.10e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 57.23  E-value: 2.10e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15224693     78 KTAWSEEEDQILIEAHKVLGTK-WVEIAQQLPGRSDNNIKNHWNTTKRR 125
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNnWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 80-123 4.27e-11

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 56.43  E-value: 4.27e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 15224693  80 AWSEEEDQILIEAHKVLGTK-WVEIAQQLPGRSDNNIKNHWNTTK 123
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKNnWEKIAKELPGRTPKQCRERWRNLL 45
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 21-198 4.04e-24

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 99.67  E-value: 4.04e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15224693   21 KSDIDKVNWTESEDIKLKEIMALGPKNKWTKVAKKFE-GRTGKQCRERWYNHARPNIKKTAWSEEEDQILIEAHKVLGTK 99
Cdd:PLN03091   9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGlQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15224693  100 WVEIAQQLPGRSDNNIKNHWNTTKRRVQNKRGgtVNPVGNNILENYircitinnedflkTDGSYGEPTNIESDDDSKDML 179
Cdd:PLN03091  89 WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG--IDPNTHKPLSEV-------------ENGEDKNPPTDDKSDKASSVV 153

                        170
                 ....*....|....*....
gi 15224693  180 YGEMNLsletITTQTTKPL 198
Cdd:PLN03091 154 SNELNL----LKADNSKPL 168
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 14-125 3.65e-20

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 88.31  E-value: 3.65e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15224693  14 STSKYLKKSDIDKVNWTESED-IKLKEIMALGPkNKWTKVAKKFEGRTGKQCRERWYNHARPNIKKTAWSEEEDQILIEA 92
Cdd:COG5147   8 ELQIKLMQTKRKGGSWKRTEDeDLKALVKKLGP-NNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDL 86

                        90       100       110
                ....*....|....*....|....*....|...
gi 15224693  93 HKVLGTKWVEIAQQLPGRSDNNIKNHWNTTKRR 125
Cdd:COG5147  87 DKELGTQWSTIADYKDRRTAQQCVERYVNTLED 119
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 29-131 1.35e-19

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 84.36  E-value: 1.35e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15224693   29 WTESEDIKLKEIMALGPKNKWTKVAKKfEG--RTGKQCRERWYNHARPNIKKTAWSEEEDQILIEAHKVLGTKWVEIAQQ 106
Cdd:PLN03212  28 WTVEEDEILVSFIKKEGEGRWRSLPKR-AGllRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGR 106

                         90       100
                 ....*....|....*....|....*
gi 15224693  107 LPGRSDNNIKNHWNTTKRRVQNKRG 131
Cdd:PLN03212 107 IPGRTDNEIKNYWNTHLRKKLLRQG 131
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 78-123 2.57e-14

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 64.83  E-value: 2.57e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15224693    78 KTAWSEEEDQILIEAHKVLGTKWVEIAQQLPGRSDNNIKNHWNTTK 123
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 29-89 1.71e-11

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 57.71  E-value: 1.71e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15224693    29 WTESEDIKLKEIMALGpKNKWTKVAKKFEGRTGKQCRERWYNHARPNIKKTAWSEEEDQIL 89
Cdd:pfam13921   1 WTEEEDEKLLKLVEKY-GNDWKQIAKELGRRTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
78-125 2.10e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 57.23  E-value: 2.10e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15224693     78 KTAWSEEEDQILIEAHKVLGTK-WVEIAQQLPGRSDNNIKNHWNTTKRR 125
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNnWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 80-123 4.27e-11

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 56.43  E-value: 4.27e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 15224693  80 AWSEEEDQILIEAHKVLGTK-WVEIAQQLPGRSDNNIKNHWNTTK 123
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKNnWEKIAKELPGRTPKQCRERWRNLL 45
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 26-71 1.74e-10

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 54.43  E-value: 1.74e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 15224693    26 KVNWTESEDIKLKE-IMALGpkNKWTKVAKKFEGRTGKQCRERWYNH 71
Cdd:pfam00249   1 RGPWTPEEDELLLEaVEKLG--NRWKKIAKLLPGRTDNQCKNRWQNY 45
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 28-71 2.30e-10

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 54.12  E-value: 2.30e-10
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 15224693  28 NWTESEDIKLKEIMALGPKNKWTKVAKKFEGRTGKQCRERWYNH 71
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
26-74 7.63e-10

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 53.00  E-value: 7.63e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15224693     26 KVNWTESEDIKLKEIMALGPKNKWTKVAKKFEGRTGKQCRERWYNHARP 74
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 81-122 1.73e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 44.22  E-value: 1.73e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15224693    81 WSEEEDQILIEAHKVLGTKWVEIAQQLPGRSDNNIKNHWNTT 122
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRK 42
SANT_CDC5_II cd11659
SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, ...
 74-113 4.91e-05

SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 212557 [Multi-domain]  Cd Length: 53  Bit Score: 39.99  E-value: 4.91e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 15224693  74 PNIKKTAWSEEEDQILIEAHKVLGTKWVEIAqQLPGRSDN 113
Cdd:cd11659   1 PSIKKTEWTREEDEKLLHLAKLLPTQWRTIA-PIVGRTAQ 39
SANT_CDC5_II cd11659
SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, ...
 24-72 3.48e-03

SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 212557 [Multi-domain]  Cd Length: 53  Bit Score: 34.59  E-value: 3.48e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 15224693  24 IDKVNWTESEDIKLKEIMALGPkNKWTKVAKKFeGRTGKQCRERwYNHA 72
Cdd:cd11659   3 IKKTEWTREEDEKLLHLAKLLP-TQWRTIAPIV-GRTAQQCLER-YNKL 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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