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    TRM3 LONGIFOLIA protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838443, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TRM3
    Official Full Name
    LONGIFOLIA protein
    Primary source
    TAIR:AT1G18620
    Locus tag
    AT1G18620
    See related
    Araport:AT1G18620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F25I16.3; F25I16_3; TON1 Recruiting Motif 3
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    Genomic context

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    See TRM3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (6409655..6414569)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RHOMBOID-like protein 12 Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene glycine-rich RNA-binding protein 6 Neighboring gene 3-phosphoserine phosphatase Neighboring gene plasmodesmata callose-binding protein 3 Neighboring gene zinc finger (C3HC4-type RING finger) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functionally redundant LNG3 and LNG4 genes regulate turgor-driven polar cell elongation through activation of XTH17 and XTH24. Lee YK, et al. Plant Mol Biol, 2018 May. PMID 29616436
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LONGIFOLIA related genes play an important role in polar cell elongation by changing turgor pressure and controlling the activation of XTH17 and XTH24. [LNG4]
      Title: Functionally redundant LNG3 and LNG4 genes regulate turgor-driven polar cell elongation through activation of XTH17 and XTH24.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001084089.1
    NM_001332353.1
    NM_101720.8

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of monopolar cell growth IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within unidimensional cell growth IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    LONGIFOLIA protein
    NP_001077558.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 1906 Blast hits to 1265 proteins in 203 species: Archae - 0; Bacteria - 130; Metazoa - 671; Fungi - 139; Plants - 265; Viruses - 11; Other Eukaryotes - 690 (source: NCBI BLink).
    NP_173297.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 1987 Blast hits to 1263 proteins in 207 species: Archae - 0; Bacteria - 172; Metazoa - 665; Fungi - 149; Plants - 271; Viruses - 6; Other Eukaryotes - 724 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6409655..6414569
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332351.1 → NP_001322622.1  LONGIFOLIA protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WA03, A0A384KGZ0, A0A654EB14, Q9FZ83
      Conserved Domains (1) summary
      pfam14309
      Location:780 → 955
      DUF4378; Domain of unknown function (DUF4378)

    2. NM_001332352.1 → NP_001322624.1  LONGIFOLIA protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WA03, A0A384KGZ0, A0A654EB14, Q9FZ83
      Conserved Domains (1) summary
      pfam14309
      Location:780 → 955
      DUF4378; Domain of unknown function (DUF4378)

    3. NM_101720.8 → NP_173297.1  LONGIFOLIA protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173297.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WA03, A0A384KGZ0, A0A654EB14, Q9FZ83
      Conserved Domains (1) summary
      pfam14309
      Location:780 → 955
      DUF4378; Domain of unknown function (DUF4378)

    4. NM_001084089.1 → NP_001077558.1  LONGIFOLIA protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077558.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EB14, A8MQH9
      Conserved Domains (2) summary
      pfam14309
      Location:817 → 991
      DUF4378; Domain of unknown function (DUF4378)
      pfam14383
      Location:312 → 329
      VARLMGL; DUF761-associated sequence motif

    5. NM_001332353.1 → NP_001322623.1  LONGIFOLIA protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AUN2, A0A7G2DWD2
    Nucleotide Protein
    Heading Accession and Version

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