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Conserved domains on  [gi|145323938|ref|NP_001077558|]
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LONGIFOLIA protein [Arabidopsis thaliana]

Protein Classification

LNG1/LNG2 family protein( domain architecture ID 10626494)

LNG1/LNG2 family protein is a DUF4378 domain-containing protein; similar to Arabidopsis thaliana protein LONGIFOLIA 1 and protein LONGIFOLIA 2, which regulate leaf morphology by promoting longitudinal polar cell elongation independently of ROT3

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4378 pfam14309
Domain of unknown function (DUF4378);
816-991 1.55e-36

Domain of unknown function (DUF4378);


:

Pssm-ID: 464133  Cd Length: 157  Bit Score: 135.14  E-value: 1.55e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323938   816 DHRYISEILLASGLLLRDLGSGLttfqLHPSGHPINPELFLVIEQTKGCSSSSNE-KINRKLVFDAVNEMLGKKLafvES 894
Cdd:pfam14309    1 EFSYVRDILLASGLLGKDESLSR----WHSPDCPLDPSLFDELEEKYGGGEETREsRSERKLLFDLVNEALVEIL---AS 73

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323938   895 YVDPWMKQA----KARKKVLSAQNLLKELCSEIEILQKQAKKRSENLllleeeeeeeedflkcILDEDMAiQSEKWTDFD 970
Cdd:pfam14309   74 SSYPPGWVSsassRRRPKVPSGEGLLEEVWSEIRSWLSPESGLMLDE----------------LVDKDLS-GRGGWLDLE 136

                          170       180
                   ....*....|....*....|.
gi 145323938   971 DAIPGLVLDMERLLFKDLVKE 991
Cdd:pfam14309  137 DEVDEIGLEIERLILDDLVEE 157
 
Name Accession Description Interval E-value
DUF4378 pfam14309
Domain of unknown function (DUF4378);
816-991 1.55e-36

Domain of unknown function (DUF4378);


Pssm-ID: 464133  Cd Length: 157  Bit Score: 135.14  E-value: 1.55e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323938   816 DHRYISEILLASGLLLRDLGSGLttfqLHPSGHPINPELFLVIEQTKGCSSSSNE-KINRKLVFDAVNEMLGKKLafvES 894
Cdd:pfam14309    1 EFSYVRDILLASGLLGKDESLSR----WHSPDCPLDPSLFDELEEKYGGGEETREsRSERKLLFDLVNEALVEIL---AS 73

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323938   895 YVDPWMKQA----KARKKVLSAQNLLKELCSEIEILQKQAKKRSENLllleeeeeeeedflkcILDEDMAiQSEKWTDFD 970
Cdd:pfam14309   74 SSYPPGWVSsassRRRPKVPSGEGLLEEVWSEIRSWLSPESGLMLDE----------------LVDKDLS-GRGGWLDLE 136

                          170       180
                   ....*....|....*....|.
gi 145323938   971 DAIPGLVLDMERLLFKDLVKE 991
Cdd:pfam14309  137 DEVDEIGLEIERLILDDLVEE 157
 
Name Accession Description Interval E-value
DUF4378 pfam14309
Domain of unknown function (DUF4378);
816-991 1.55e-36

Domain of unknown function (DUF4378);


Pssm-ID: 464133  Cd Length: 157  Bit Score: 135.14  E-value: 1.55e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323938   816 DHRYISEILLASGLLLRDLGSGLttfqLHPSGHPINPELFLVIEQTKGCSSSSNE-KINRKLVFDAVNEMLGKKLafvES 894
Cdd:pfam14309    1 EFSYVRDILLASGLLGKDESLSR----WHSPDCPLDPSLFDELEEKYGGGEETREsRSERKLLFDLVNEALVEIL---AS 73

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323938   895 YVDPWMKQA----KARKKVLSAQNLLKELCSEIEILQKQAKKRSENLllleeeeeeeedflkcILDEDMAiQSEKWTDFD 970
Cdd:pfam14309   74 SSYPPGWVSsassRRRPKVPSGEGLLEEVWSEIRSWLSPESGLMLDE----------------LVDKDLS-GRGGWLDLE 136

                          170       180
                   ....*....|....*....|.
gi 145323938   971 DAIPGLVLDMERLLFKDLVKE 991
Cdd:pfam14309  137 DEVDEIGLEIERLILDDLVEE 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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